RNA id: TU112121


Basic Information

Item Value
RNA id TU112121
length 246
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G89896
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 745754 ~ 745999 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttatggagcattggtctttcttctgggatagatgggacctgtacaaaccggacatctgaacagaaggggggctaatgcattgggagagcgtatgggcagagaaattgagaatcatttaaactagggacaaggggggcagggagctctgacaatgggagatgttccactaaggaaagaaaacaaagggaacccgctagtaggaaagtcctgaaatgtttgtacctcaatgccaggagtataagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112047 lncRNA upstream 343288 342615 ~ 402466 (+) True G89837
TU112039 lncRNA upstream 517030 227251 ~ 228724 (+) True G89832
TU112024 lncRNA upstream 565819 177246 ~ 179935 (+) True G89819
TU112023 lncRNA upstream 569251 175050 ~ 176503 (+) True G89818
TU111984 lncRNA upstream 702689 42802 ~ 43065 (+) True G89784
TU112123 lncRNA downstream 131912 877911 ~ 878653 (+) True G89898
TU112126 lncRNA downstream 169004 915003 ~ 915213 (+) True G89901
TU112134 lncRNA downstream 224644 970643 ~ 971264 (+) True G89908
TU112139 lncRNA downstream 365955 1111954 ~ 1112159 (+) True G89913
TU112165 lncRNA downstream 594902 1340901 ~ 1341295 (+) True G89938
AMCG00017389 mRNA upstream 305460 421509 ~ 440294 (+) True AMCG00017389
AMCG00017388 mRNA upstream 534800 209397 ~ 210954 (+) False AMCG00017388
AMCG00017385 mRNA upstream 574007 109675 ~ 171747 (+) True AMCG00017385
AMCG00017386 mRNA upstream 647357 57720 ~ 98397 (+) False AMCG00017386
AMCG00017390 mRNA downstream 109279 855278 ~ 887994 (+) True AMCG00017390
AMCG00017392 mRNA downstream 519443 1265442 ~ 1267334 (+) True AMCG00017392
AMCG00017399 mRNA downstream 988433 1734432 ~ 1736022 (+) True AMCG00017399
AMCG00017398 mRNA downstream 1012387 1758386 ~ 1768848 (+) True AMCG00017398
AMCG00017402 mRNA downstream 1126628 1872627 ~ 1875428 (+) True AMCG00017402
TU112033 other upstream 533818 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 647371 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 1941421 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 1941421 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 3916660 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 5983739 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 5983739 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile