RNA id: TU112167


Basic Information

Item Value
RNA id TU112167
length 298
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G89940
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1358684 ~ 1358981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tCTTAAGATCTcattgcagctcaacatattctatgtattttgtttcgtctccgtcccttttgtatgcgctatacattttcttcctcttgatattttttgcatacctctattaaaccattttggccactgttttttggtcctcaatttgctaagttttggtacaaattgctcctgagcctcaagtagtatattcttaaaatataaccatccattttcaactgaatctgtatccagtgtgctccagtctacctcttctaagtgccgcctcataccttcaaggtttgcttttctgaaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112166 lncRNA downstream 17595 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 319213 1039272 ~ 1039471 (-) True G89912
TU112135 lncRNA downstream 387256 968543 ~ 971428 (-) True G89909
TU112125 lncRNA downstream 447036 911396 ~ 911648 (-) True G89900
TU112120 lncRNA downstream 636973 721301 ~ 721711 (-) True G89895
TU112257 lncRNA upstream 468699 1827680 ~ 1831528 (-) True G90017
TU112321 lncRNA upstream 566227 1925208 ~ 1926851 (-) True G90066
TU112352 lncRNA upstream 695858 2054839 ~ 2055363 (-) True G90093
TU112357 lncRNA upstream 720059 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 826404 2185385 ~ 2185739 (-) True G90129
AMCG00017393 mRNA downstream 69251 1275232 ~ 1289433 (-) True AMCG00017393
AMCG00017391 mRNA downstream 422008 935881 ~ 936676 (-) True AMCG00017391
AMCG00017387 mRNA downstream 888254 360455 ~ 470430 (-) True AMCG00017387
AMCG00017384 mRNA downstream 1081860 160054 ~ 276824 (-) True AMCG00017384
AMCG00017394 mRNA upstream 79547 1438528 ~ 1447581 (-) True AMCG00017394
AMCG00017395 mRNA upstream 196547 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017396 mRNA upstream 240607 1599588 ~ 1600290 (-) True AMCG00017396
AMCG00017397 mRNA upstream 241610 1600591 ~ 1601058 (-) True AMCG00017397
AMCG00017400 mRNA upstream 345965 1704946 ~ 1707277 (-) True AMCG00017400
TU112073 other downstream 1006898 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1252799 105685 ~ 105885 (-) True G89804
TU112472 other upstream 1249708 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 3183794 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3799403 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3799403 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3863492 5222473 ~ 5223047 (-) True G90502

Expression Profile