RNA id: TU112257


Basic Information

Item Value
RNA id TU112257
length 323
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G90017
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1827680 ~ 1831528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttcatcataataGAAATTGTTTGCTTCATCATGAGAaAAGTATATACAAGTTGCCACAAACAGAcccaggacagtacagGTTTACAAACTCAAACAGCAGAGATGCAGAAAGAAATGGATGCACTGGAAAACTGACACCAAAATCACTTGGAGAAAGGAAATGTCTGCAGTTCTGAGCATGGAAACGACAGCTGCTCTTTCTCTATTTGCCATGaggctgaaatgtttttcatttcaataggGGATGTTTGAACTATGGGTAGTAtggtggtgcagtggttagcactgctgccttaAATTCCGGCCTTGGTTGTCTgggg

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112167 lncRNA downstream 468699 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 486591 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 788209 1039272 ~ 1039471 (-) True G89912
TU112135 lncRNA downstream 856252 968543 ~ 971428 (-) True G89909
TU112125 lncRNA downstream 916032 911396 ~ 911648 (-) True G89900
TU112321 lncRNA upstream 93680 1925208 ~ 1926851 (-) True G90066
TU112352 lncRNA upstream 223311 2054839 ~ 2055363 (-) True G90093
TU112357 lncRNA upstream 247512 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 353857 2185385 ~ 2185739 (-) True G90129
TU112399 lncRNA upstream 453697 2285225 ~ 2285529 (-) True G90139
AMCG00017401 mRNA downstream 46472 1771413 ~ 1781208 (-) True AMCG00017401
AMCG00017400 mRNA downstream 120403 1704946 ~ 1707277 (-) True AMCG00017400
AMCG00017397 mRNA downstream 226622 1600591 ~ 1601058 (-) True AMCG00017397
AMCG00017396 mRNA downstream 227390 1599588 ~ 1600290 (-) True AMCG00017396
AMCG00017395 mRNA downstream 266494 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017409 mRNA upstream 105594 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017410 mRNA upstream 116632 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017407 mRNA upstream 154093 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017408 mRNA upstream 174231 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017406 mRNA upstream 191904 2023432 ~ 2032216 (-) True AMCG00017406
TU112073 other downstream 1475894 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1721795 105685 ~ 105885 (-) True G89804
TU112472 other upstream 777161 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2711247 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3326856 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3326856 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3390945 5222473 ~ 5223047 (-) True G90502

Expression Profile