RNA id: TU112321


Basic Information

Item Value
RNA id TU112321
length 667
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G90066
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 1925208 ~ 1926851 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atCTGAGATGTGTAATTTTGGTTGATTCCCATGAATCAtgaataaagtacaatatattctACATGTTAGAAAATTAGAATATATCTCCGtacctgtgtttgttttactttttttttttgctcatctttatcaatgatTTTGCCAATCATTGTGGAGGTGACAGGTTTctagctatttttatttttttattttttatcttttattatttttttgtatccttcacaaatgtatattgtttgtttattgtgtatttgctgTATCATTTAATGGGAAACAAAATGTCATGTTTATGTTTCATCTTTTCAGTTTGGCAACTCTGGTGGGCCCCTTATCAATCTGGACGGGGAGGTGATCGGTATCAATACCATGAAAGTAACAGCAGGCATATCCTTTGCTATTCCTTCAGACCATCTCAGAGAGTTCCTCAGCAGAATGGCCGAAAATAAAAAATCTTGGTTTGGTCGCTCAGAATCCAAGCGTCGTTATGTGGGTGTGATGATGCTAACACTGACTCCCAGGTAGGAGGAGGATTTTACAAAGAAGGAACTGACAATTAAGATATTTACAAAGACACAATGGCCAAAGTACTTCTCCTTAACAcgcaaaataaaatgcagacagCTGCAACAGCTATGTGCAGCAATCTGAACAAcgaattgttttcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112257 lncRNA downstream 93680 1827680 ~ 1831528 (-) True G90017
TU112167 lncRNA downstream 566227 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 584119 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 885737 1039272 ~ 1039471 (-) True G89912
TU112135 lncRNA downstream 953780 968543 ~ 971428 (-) True G89909
TU112352 lncRNA upstream 127988 2054839 ~ 2055363 (-) True G90093
TU112357 lncRNA upstream 152189 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 258534 2185385 ~ 2185739 (-) True G90129
TU112399 lncRNA upstream 358374 2285225 ~ 2285529 (-) True G90139
TU112428 lncRNA upstream 446259 2373110 ~ 2464259 (-) True G90157
AMCG00017401 mRNA downstream 144000 1771413 ~ 1781208 (-) True AMCG00017401
AMCG00017400 mRNA downstream 217931 1704946 ~ 1707277 (-) True AMCG00017400
AMCG00017397 mRNA downstream 324150 1600591 ~ 1601058 (-) True AMCG00017397
AMCG00017396 mRNA downstream 324918 1599588 ~ 1600290 (-) True AMCG00017396
AMCG00017395 mRNA downstream 364022 1555528 ~ 1561186 (-) True AMCG00017395
AMCG00017409 mRNA upstream 10271 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017410 mRNA upstream 21309 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017407 mRNA upstream 58770 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017408 mRNA upstream 78908 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017406 mRNA upstream 96581 2023432 ~ 2032216 (-) True AMCG00017406
TU112073 other downstream 1573422 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1819323 105685 ~ 105885 (-) True G89804
TU112472 other upstream 681838 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2615924 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3231533 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3231533 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3295622 5222473 ~ 5223047 (-) True G90502

Expression Profile