RNA id: TU112325


Basic Information

Item Value
RNA id TU112325
length 1569
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G90070
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2003038 ~ 2004606 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgcTAACATTCCAGCCATAAAAagtgatttatattaaaaattaaaaataaacataaaacccCCAAAACATTTCTACATATAGAAATAACATTCATTACTAcgcatatacatacaaaaaccaGCACACATTTCCTGTTATACACAGACTACAATATATCAACAGAAAGCGTGCATTTCTCTACACGGTTTATATCTTCATTTGTCATTTTAGGCACTTGTGGGTGgattttaaatggtatttaaGCAAAACATCCAATGTACTTTCTAATGATTTAGGTATGTGTACAGTCATTTAAAATCAAGCACTAGTGTTTTCTACAGATTATTGACttgcattataaaaatattacgaaatattacaaaaatagtGTTCACTATTtatcacaaaaaacattttaattatttggggAAGTTGTGTCAAGCATACGTTTTGTTTTCAGCAGACTGACCAGGACACTAATGTCCACACTTATAAGATTACAATACAATTGTGTGGCATTTCCTGAAGAGTGTAAATATTGCATCCAACatttattaacaaatatttgACAATTTTGTGGTCATCCCatatagataatatataatatggtcccgataataataataaataatacattccaTAAAATGCCTTGTAAGGATggtagattttaaataaaaataaagatcaaaTCCAATATCAATCAAACAATACTTGATACAGTACAGCCCACAAAcgtaaaacataatacaatgtaattaaggAAAGtggacagaaataaaacatacttaTGAAAAGAACATTTTTCTGTAGGAGATTTCAAACCACACAAAACAGATAGTATATTTGCTGCAACCTACATCAAACCATTTCAAGGCGACGGAGGGCCAAGGTATGATCCAAAAAAGGGCCAGAGCTCGAGAtggatgtattttaaagattttaaacagGCATATGAAACACATTTACTTCCCCAAATACACTCATTAACAAGTAACATTTCccatcaaaatattttattaaataaatgcataaaattaaaacatgatataaaTACTCCCTGAGCACACCACCAAAAACAGAATGTCATACATACAATTGAATGACTGTAAAGAATACTTTCGGATGGTATGCGGAACGTGCAGTAACCGAAAATTACTGCTTTCAATTGAATCAGAAGGCACAGAGTCCCCAACAAATACAACAGGTCTGGATTTagttggcctttttttttttttatatatcaaacGCTGTACTGAATAATTCTCACTGCAACAAAAATACTTACGGGATGTGTATTATCTAGTAGTAAGGATTACGAATGTAGTTTCACATATAGAAATAATGTGGTCCATAAACAAGCAGCCATCTGAATGAAGAGAAAACTCTGAATAATCTGGCTTTTTGTGCATTACCATTTCCTCTAGGTAATAGAGATTGAAAGTCATATTggtatattaaacataaaatggGATgttactatacattttattttattttggaccTTTATAAAGTGTTCAGTGCCAATGGTACTAAAATTACTTGAAATTGATCATTTGGTCAAAACTAATGCACAGGAGCAAAGATACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112288 lncRNA upstream 68254 1929142 ~ 1934784 (+) True G90042
TU112214 lncRNA upstream 413233 1580983 ~ 1589805 (+) True G89983
TU112165 lncRNA upstream 661743 1340901 ~ 1341295 (+) True G89938
TU112139 lncRNA upstream 890879 1111954 ~ 1112159 (+) True G89913
TU112134 lncRNA upstream 1031774 970643 ~ 971264 (+) True G89908
TU112409 lncRNA downstream 457276 2461882 ~ 2504164 (+) True G90144
TU112419 lncRNA downstream 487301 2491907 ~ 2528801 (+) True G90149
TU112532 lncRNA downstream 1232839 3237445 ~ 3237726 (+) True G90248
TU112571 lncRNA downstream 1893212 3897818 ~ 3898125 (+) True G90284
TU112621 lncRNA downstream 2307652 4312258 ~ 4312475 (+) True G90333
AMCG00017404 mRNA upstream 69587 1923477 ~ 1933451 (+) True AMCG00017404
AMCG00017411 mRNA upstream 73584 1923477 ~ 1929454 (+) True AMCG00017411
AMCG00017403 mRNA upstream 108576 1876676 ~ 1894462 (+) True AMCG00017403
AMCG00017402 mRNA upstream 127610 1872627 ~ 1875428 (+) True AMCG00017402
AMCG00017398 mRNA upstream 234190 1758386 ~ 1768848 (+) True AMCG00017398
AMCG00017405 mRNA downstream 43071 2047677 ~ 2049406 (+) True AMCG00017405
AMCG00017412 mRNA downstream 103285 2107891 ~ 2129512 (+) True AMCG00017412
AMCG00017413 mRNA downstream 423287 2427893 ~ 2460519 (+) True AMCG00017413
AMCG00017415 mRNA downstream 568883 2573489 ~ 2598970 (+) True AMCG00017415
AMCG00017416 mRNA downstream 641668 2646274 ~ 2649483 (+) True AMCG00017416
TU112033 other upstream 1791102 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 1904655 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 682814 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 682814 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 2658053 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4725132 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4725132 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile