RNA id: TU112352


Basic Information

Item Value
RNA id TU112352
length 525
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G90093
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2054839 ~ 2055363 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttttgaatgccttgaagcccaatttccatttgtgtccccaggtgcgcatgtccctgctgatctggaaaggctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttccctcagtctctccgaggaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcaatatccttcttgaagtgtggtgcccagaactgtacacagtattccagatgaggtctaactagtgcattgtacagtctgaacattacttcccttgttttaaattctacacttttgacaatatacactaacatcctgtttgactttttttattgcttccccacactgtttggatggagaaagtgaggagtccacatagactcctatgTCTTTCTGATGCgatacttaatctagttctattcctcccatagtgtaattataatggacatttttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112321 lncRNA downstream 127988 1925208 ~ 1926851 (-) True G90066
TU112257 lncRNA downstream 223311 1827680 ~ 1831528 (-) True G90017
TU112167 lncRNA downstream 695858 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 713750 1340872 ~ 1341089 (-) True G89939
TU112138 lncRNA downstream 1015368 1039272 ~ 1039471 (-) True G89912
TU112357 lncRNA upstream 23677 2079040 ~ 2079244 (-) True G90098
TU112389 lncRNA upstream 130022 2185385 ~ 2185739 (-) True G90129
TU112399 lncRNA upstream 229862 2285225 ~ 2285529 (-) True G90139
TU112428 lncRNA upstream 317747 2373110 ~ 2464259 (-) True G90157
TU112503 lncRNA upstream 666063 2721426 ~ 2722298 (-) True G90221
AMCG00017406 mRNA downstream 22623 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 39277 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017407 mRNA downstream 61298 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017410 mRNA downstream 90275 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017409 mRNA downstream 107914 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017414 mRNA upstream 20815 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017417 mRNA upstream 473552 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017418 mRNA upstream 546420 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017426 mRNA upstream 655939 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017425 mRNA upstream 786559 2841922 ~ 3087650 (-) True AMCG00017425
TU112073 other downstream 1703053 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1948954 105685 ~ 105885 (-) True G89804
TU112472 other upstream 553326 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2487412 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3103021 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3103021 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3167110 5222473 ~ 5223047 (-) True G90502

Expression Profile