RNA id: TU112357


Basic Information

Item Value
RNA id TU112357
length 205
lncRNA type intronic
GC content 0.45
exon number 1
gene id G90098
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2079040 ~ 2079244 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatgtcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttgtaTGCAGcgaggtatgcagcaaagcatttgtgaagccacaacacGTACAACCTTGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112352 lncRNA downstream 23677 2054839 ~ 2055363 (-) True G90093
TU112321 lncRNA downstream 152189 1925208 ~ 1926851 (-) True G90066
TU112257 lncRNA downstream 247512 1827680 ~ 1831528 (-) True G90017
TU112167 lncRNA downstream 720059 1358684 ~ 1358981 (-) True G89940
TU112166 lncRNA downstream 737951 1340872 ~ 1341089 (-) True G89939
TU112389 lncRNA upstream 106141 2185385 ~ 2185739 (-) True G90129
TU112399 lncRNA upstream 205981 2285225 ~ 2285529 (-) True G90139
TU112428 lncRNA upstream 293866 2373110 ~ 2464259 (-) True G90157
TU112503 lncRNA upstream 642182 2721426 ~ 2722298 (-) True G90221
TU112506 lncRNA upstream 645940 2725184 ~ 2728350 (-) True AMCG00017426
AMCG00017406 mRNA downstream 46824 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 63478 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017407 mRNA downstream 85499 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017410 mRNA downstream 114476 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017409 mRNA downstream 132115 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017417 mRNA upstream 449671 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017418 mRNA upstream 522539 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017426 mRNA upstream 632058 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017425 mRNA upstream 762678 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 1350377 3429621 ~ 3487525 (-) True AMCG00017430
TU112073 other downstream 1727254 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 1973155 105685 ~ 105885 (-) True G89804
TU112472 other upstream 529445 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2463531 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 3079140 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 3079140 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3143229 5222473 ~ 5223047 (-) True G90502

Expression Profile