RNA id: TU112389


Basic Information

Item Value
RNA id TU112389
length 355
lncRNA type intronic
GC content 0.48
exon number 1
gene id G90129
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2185385 ~ 2185739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaactctttgaagtggacgagagccgaaatcccgacatagagctacaAACCCGGgtcaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcaagaactcagggaccaatcacctattgatctgacagactattAAGGAACAGCGgacagtctttctctctctctctctctcacctgaaccagaaactcgctgccacagctcaacctgtagctctgttgccagaaccggaaccagaaaccaaccaagtctttgccggcaacagaagagttaaactgggagaaggagatt

Function

GO:

id name namespace
GO:0005871 kinesin complex cellular_component
GO:0005875 microtubule associated complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112357 lncRNA downstream 106141 2079040 ~ 2079244 (-) True G90098
TU112352 lncRNA downstream 130022 2054839 ~ 2055363 (-) True G90093
TU112321 lncRNA downstream 258534 1925208 ~ 1926851 (-) True G90066
TU112257 lncRNA downstream 353857 1827680 ~ 1831528 (-) True G90017
TU112167 lncRNA downstream 826404 1358684 ~ 1358981 (-) True G89940
TU112399 lncRNA upstream 99486 2285225 ~ 2285529 (-) True G90139
TU112428 lncRNA upstream 187371 2373110 ~ 2464259 (-) True G90157
TU112503 lncRNA upstream 535687 2721426 ~ 2722298 (-) True G90221
TU112506 lncRNA upstream 539445 2725184 ~ 2728350 (-) True AMCG00017426
TU112509 lncRNA upstream 650780 2836519 ~ 2836798 (-) True G90226
AMCG00017406 mRNA downstream 153169 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 169823 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017407 mRNA downstream 191844 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017410 mRNA downstream 220821 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017409 mRNA downstream 238460 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017417 mRNA upstream 343176 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017418 mRNA upstream 416044 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017426 mRNA upstream 525563 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017425 mRNA upstream 656183 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 1243882 3429621 ~ 3487525 (-) True AMCG00017430
TU112073 other downstream 1833599 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2079500 105685 ~ 105885 (-) True G89804
TU112472 other upstream 422950 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2357036 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2972645 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2972645 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 3036734 5222473 ~ 5223047 (-) True G90502

Expression Profile