RNA id: TU112399


Basic Information

Item Value
RNA id TU112399
length 305
lncRNA type intronic
GC content 0.43
exon number 1
gene id G90139
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2285225 ~ 2285529 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcctctgttccagggtgaaaaggttcagttccctcagtctctccaagtagaacattcccttcagacctggaataagtctggttgctctcctctgaacttcctctagagcagcgatatccttcttgaagtgtggtgcccagaactgtacacagtattccatatgaggtctaactagtgcattgtacagtctgaacattacttcccttgttttaaattctacacttttgacaatataccctaacattctgttttccttttttattgcttccccacattgtttggctggagaaagtgaggagtccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112389 lncRNA downstream 99486 2185385 ~ 2185739 (-) True G90129
TU112357 lncRNA downstream 205981 2079040 ~ 2079244 (-) True G90098
TU112352 lncRNA downstream 229862 2054839 ~ 2055363 (-) True G90093
TU112321 lncRNA downstream 358374 1925208 ~ 1926851 (-) True G90066
TU112257 lncRNA downstream 453697 1827680 ~ 1831528 (-) True G90017
TU112428 lncRNA upstream 87581 2373110 ~ 2464259 (-) True G90157
TU112503 lncRNA upstream 435897 2721426 ~ 2722298 (-) True G90221
TU112506 lncRNA upstream 439655 2725184 ~ 2728350 (-) True AMCG00017426
TU112509 lncRNA upstream 550990 2836519 ~ 2836798 (-) True G90226
TU112527 lncRNA upstream 653721 2939250 ~ 2939477 (-) True G90243
AMCG00017406 mRNA downstream 253009 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 269663 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017407 mRNA downstream 291684 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017410 mRNA downstream 320661 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017409 mRNA downstream 338300 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017417 mRNA upstream 243386 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017418 mRNA upstream 316254 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017426 mRNA upstream 425773 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017425 mRNA upstream 556393 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 1144092 3429621 ~ 3487525 (-) True AMCG00017430
TU112073 other downstream 1933439 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2179340 105685 ~ 105885 (-) True G89804
TU112472 other upstream 323160 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2257246 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2872855 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2872855 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2936944 5222473 ~ 5223047 (-) True G90502

Expression Profile