RNA id: TU112409


Basic Information

Item Value
RNA id TU112409
length 1973
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G90144
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2461882 ~ 2504164 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctcacaatttgtttgacttttttgttttgtttacagttgaaagaatgtatacaaattaaaaaaaaatacttttaacaaagTTGGTTCTTTAAATGAATAAGCAATTtatatagaaaaagaaaacttaaaaaaaaagaaaaggaaactgtgTGAGTATTATCCTGGATTGCAGTGAATGGTGAAGTTTTGCAATGTAAAAGCAGTGATTAAATCTCTGAGAACACCAGCCCTCATTGCTCTGTAagcaatgatttgtttttggggggaaagaaaaaggggTTGTGTTTCAATCACTACCAATAGAGTAACGGGAAACATCTTCAAAATTTAGGCTTCGTGCTTTAGAGATTTAATCACTGCCTGATAGTgtttctcttttaaatgaaGGCATGTATTGAGGTTTACTTAAGAACAAGTATTCCAcaatgcaacaaaaacaaactctgaaaaatgcttttgtcaatttttatttataagttcTGTAGTTGTGGCAGAGTTGCCACAGTATCTGGTTTAACAATGCCAATGcacaaaaaacaggaagattGCTTTTACCTTCCAGCTTAGTGTGTTCAATAGGGTGCAACGATTATCtccttatttacttttttttcttttcttggatcCAAGTACTGTACTATCCAGTAGATGTTAAGAAGCAGGGAAAACCAAATGGCTTGTGTAAAAGTAAAACTCTCCAGTTGCTGCTAAAACTAACTGCAATTGTTACCCCAAATGCAGTGATTCAAAACTGACCTGTCCGTCCTCCCCAAATGCGACTTAGTTGGCCCTATTTTGTTCTTGTCTGCAAAGTGCCTCGGACTCATTACCAtggggatgggggaggggggcttttatgaatttaattttaatcccACTTGAATGTAACAGCCATTAATGTCTGCCAAACAAGGAGATGtaggagatgtgtgtgtgtgtgtggggcgggggggtgtcTTTAAATACTtggatttatataaataaactgtaggGCACTTCTCTTGTGTAATCTTGGTCtgctatacaaatatatatatttttgaagaaGGGTAAAAGCTTTCCCTATGGTGAGAGTATTTTTTATTCCTTCAGTTTTCCCTCTTTAGTAACCAGCTGTCACTTCAGAGAATGTGTAGTACAGTCTTTTCTTTTTAGGTAATTTTCTACCCTGCTTGTTTagaaccatttctagggttgaATGTTCCTTTGTCAGTATCGGAACTCTTGCATCCTGCTGATTCACTTTGATTGTGTCATTTGTGGCCGAAGTAGGGGTGCCCaaccctttctttttcttgataCCAGAACGTATAGAGATTTAACACCCCACAAAGGCTGGGGCTGAGGTGGTAGCTCTTCTATTCATTTGTATTGAACAGCTTTACACATTATACATGAATTGTGAAGATGTGCACTGTTGACCTATCAATCCAGTTGTATAAACAAGCAAGAAAATGACtcctttcaaagaaaataaatcatttagtTGAGTCCATCACAGAATATTTTGTGATAATTAATATCTGACAGCTCTTTAAACAGAGGTCCAGTTTAATAGCCTGCATGGCTACCTTTGACCTAAAGAGAGATTTGGGCATCCCTGGATTTAATTAGGCAGTGCTTTATAATCCAGGTGTCAATTTTTGAACCCACTACAAAGTAAAGTGCCAGTCAGTTCACAGTAGCGCAATAAGATAATCAGTTCACCCttgtgtgtgctgttgtttttgttttattatttttatttttgttttaattttccaagTTTGTACACTTAGCAATACTGGGATAACAAcctttttctctgtttattttttgtttgtttttgaaagtattttattaGTGCCATGAAGCTCTtactaaatagaaaaaaaataataatttatagttTGAAGTTACATAAGTGATTGTTGTACATTGAGTAGATTTTATATAgctgtgtgattttttttttttttttgttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112325 lncRNA upstream 457276 2003038 ~ 2004606 (+) True G90070
TU112326 lncRNA upstream 457276 2004076 ~ 2004606 (+) False G90070
TU112288 lncRNA upstream 527098 1929142 ~ 1934784 (+) True G90042
TU112214 lncRNA upstream 872077 1580983 ~ 1589805 (+) True G89983
TU112165 lncRNA upstream 1120587 1340901 ~ 1341295 (+) True G89938
TU112532 lncRNA downstream 733281 3237445 ~ 3237726 (+) True G90248
TU112571 lncRNA downstream 1393654 3897818 ~ 3898125 (+) True G90284
TU112621 lncRNA downstream 1808094 4312258 ~ 4312475 (+) True G90333
TU112625 lncRNA downstream 1826206 4330370 ~ 4330583 (+) True G90337
TU112626 lncRNA downstream 1881077 4385241 ~ 4390541 (+) True G90338
AMCG00017413 mRNA upstream 1363 2427893 ~ 2460519 (+) True AMCG00017413
AMCG00017412 mRNA upstream 332370 2107891 ~ 2129512 (+) True AMCG00017412
AMCG00017405 mRNA upstream 412476 2047677 ~ 2049406 (+) True AMCG00017405
AMCG00017404 mRNA upstream 528431 1923477 ~ 1933451 (+) True AMCG00017404
AMCG00017411 mRNA upstream 532428 1923477 ~ 1929454 (+) True AMCG00017411
AMCG00017415 mRNA downstream 69325 2573489 ~ 2598970 (+) True AMCG00017415
AMCG00017416 mRNA downstream 142110 2646274 ~ 2649483 (+) True AMCG00017416
AMCG00017419 mRNA downstream 158522 2662686 ~ 2664553 (+) True AMCG00017419
AMCG00017424 mRNA downstream 170787 2674951 ~ 2683508 (+) True AMCG00017424
AMCG00017422 mRNA downstream 183337 2687501 ~ 2694370 (+) False AMCG00017422
TU112033 other upstream 2249946 207586 ~ 211936 (+) True AMCG00017388
TU111991 other upstream 2363499 48007 ~ 98383 (+) False AMCG00017386
TU112484 other downstream 183256 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other downstream 183256 2687420 ~ 2695453 (+) False AMCG00017422
TU112690 other downstream 2158495 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 4225574 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 4225574 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU271990 False 5547 lncRNA 0.40 3 NC_053131.1 7338346 ~ 7344002 (+)