RNA id: TU112428


Basic Information

Item Value
RNA id TU112428
length 1404
lncRNA type sense_over
GC content 0.32
exon number 2
gene id G90157
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2373110 ~ 2464259 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgttttgtttagtgtttatttAACTCTTCTGACAGCAAAGTTTTTCAGGCACAGAGAatgatatgaaaataaagaaaaaaaaatttttCTCACCAAACTGAAGTTATGCACTTCTGTGGAATGTGTCATAACATCGCACTCAAAGTTTTATGCAGATGTTTAAATGCTGCAAACAACAGtaatgaaaattacaaaaacactgtaTACGAAAAgttatgtttgcttttctacaacatcttgtaaaaaaaaaaaaaagaaacaaaacaaaaaataaattatatagatATCTAGTTGAATTCTTTCAAAAACCTGCACAAATATGCAATTTCatctctttttaaaacattggaAACAGGTACATGGAATGGATTTTGTAAGAAAATATTGTAACGAAAATCTTTTGTTtctataattttacaaaaaaaaaaaaaatcacacagcTATATAAAATCTACTCAATGTACAACAATCACTTATGTAACTTCAaactataaattattattttttttctatttagtaAGAGCTTCATGGCACtaataaaatactttcaaaaacaaacaaaaaataaacagagaaaaaggTTGTTATCCCAGTATTGCTAAGTGTACAAActtggaaaattaaaacaaaaataaaaataataaaacaaaaacaacagcacacacaaGGGTGAACTGATTATCTTATTGCGCTACTGTGAACTGACTGGCACTTTACTTTGTAGTGGGTTCAAAAATTGACACCTGGATTATAAAGCACTGCCTAATTAAATCCAGGGATGCCCAAATCTCTCTTTAGGTCAAAGGTAGCCATGCAGGCTATTAAACTGGACCTCTGTTTAAAGAGCTGTCAGATATTAATTATCACAAAATATTCTGTGATGGACTCAactaaatgatttattttctttgaaaggaGTCATTTTCTTGCTTGTTTATACAACTGGATTGATAGGTCAACAGTGCACATCTTCACAATTCATGTATAATGTGTAAAGCTGTTCAATACAAATGAATAGAAGAGCTACCACCTCAGCCCCAGCCTTTGTGGGGTGTTAAATCTCTATACGTTCTGGtatcaagaaaaagaaagggttGGGCACCCCTACTTCGGCCACAAATGACACAATCAAAGTGAATCAGCAGGATGCAAGAGTTCCGATACTGACAAAGGAACATtcaaccctagaaatggttctAAACAAGCAGGGTAGAAAATTACCTAAAAAGAAAAGACTGTACTACACATTCTCTGAAGTGACAGCTGGTTACTAAAGAGGGAAAACTGAAGGAATAAAAAATACTCTCACCATAGGGAAAGCTTTTACCCttcttcaaaaatatatatatttgtatagcaGACCAAGATTACACAAGAGAAGTGCcctacagttgctttttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112399 lncRNA downstream 87581 2285225 ~ 2285529 (-) True G90139
TU112389 lncRNA downstream 187371 2185385 ~ 2185739 (-) True G90129
TU112357 lncRNA downstream 293866 2079040 ~ 2079244 (-) True G90098
TU112352 lncRNA downstream 317747 2054839 ~ 2055363 (-) True G90093
TU112321 lncRNA downstream 446259 1925208 ~ 1926851 (-) True G90066
TU112503 lncRNA upstream 257167 2721426 ~ 2722298 (-) True G90221
TU112506 lncRNA upstream 260925 2725184 ~ 2728350 (-) True AMCG00017426
TU112509 lncRNA upstream 372260 2836519 ~ 2836798 (-) True G90226
TU112527 lncRNA upstream 474991 2939250 ~ 2939477 (-) True G90243
TU112528 lncRNA upstream 475676 2939935 ~ 2940143 (-) True G90244
AMCG00017406 mRNA downstream 340894 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017408 mRNA downstream 357548 2005759 ~ 2015562 (-) True AMCG00017408
AMCG00017407 mRNA downstream 379569 1985621 ~ 1993541 (-) True AMCG00017407
AMCG00017410 mRNA downstream 408546 1948160 ~ 1964564 (-) True AMCG00017410
AMCG00017409 mRNA downstream 426185 1937122 ~ 1946925 (-) True AMCG00017409
AMCG00017417 mRNA upstream 64656 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017418 mRNA upstream 137524 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017426 mRNA upstream 247043 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017425 mRNA upstream 377663 2841922 ~ 3087650 (-) True AMCG00017425
AMCG00017430 mRNA upstream 965362 3429621 ~ 3487525 (-) True AMCG00017430
TU112073 other downstream 2021324 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2267225 105685 ~ 105885 (-) True G89804
TU112472 other upstream 144430 2608689 ~ 2615524 (-) False AMCG00017418
TU112697 other upstream 2078516 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2694125 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2694125 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2758214 5222473 ~ 5223047 (-) True G90502

Expression Profile