RNA id: TU112527


Basic Information

Item Value
RNA id TU112527
length 228
lncRNA type intronic
GC content 0.50
exon number 1
gene id G90243
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2939250 ~ 2939477 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggagtttgccaaaaggcacctgaaggactctcagaccatgagaaacaaaattctctggtctgatgaaacaaagattgaactctttggcctgaatggcaagcgtcatgtctagaggaaaccaggcaccgctcatcacctggccaataccatccctacagtgaagcatggtggtggcagcatcatgctgtggggatgtttttcagtggcaggaactgggagactagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112509 lncRNA downstream 102452 2836519 ~ 2836798 (-) True G90226
TU112506 lncRNA downstream 210900 2725184 ~ 2728350 (-) True AMCG00017426
TU112503 lncRNA downstream 216952 2721426 ~ 2722298 (-) True G90221
TU112428 lncRNA downstream 474991 2373110 ~ 2464259 (-) True G90157
TU112399 lncRNA downstream 653721 2285225 ~ 2285529 (-) True G90139
TU112528 lncRNA upstream 458 2939935 ~ 2940143 (-) True G90244
TU112536 lncRNA upstream 415588 3355065 ~ 3355489 (-) True G90252
TU112539 lncRNA upstream 465009 3404486 ~ 3404766 (-) True G90255
TU112567 lncRNA upstream 732818 3672295 ~ 3685214 (-) True G90281
TU112574 lncRNA upstream 1015411 3954888 ~ 3955136 (-) True G90287
AMCG00017426 mRNA downstream 97356 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017418 mRNA downstream 323688 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017417 mRNA downstream 372973 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017414 mRNA downstream 512123 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017406 mRNA downstream 907034 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017430 mRNA upstream 490144 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017431 mRNA upstream 590206 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017434 mRNA upstream 798336 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017432 mRNA upstream 837017 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017437 mRNA upstream 967975 3907452 ~ 3908488 (-) True AMCG00017437
TU112472 other downstream 323726 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 2587464 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2833365 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1603298 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2218907 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2218907 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2282996 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 3447775 6387252 ~ 6389038 (-) True G90715

Expression Profile