RNA id: TU112528



Basic Information


Item Value
RNA id TU112528
length 209
lncRNA type intronic
GC content 0.34
exon number 1
gene id G90244
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 2939935 ~ 2940143 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cataatgacaatgtgaaagaagtttgtttgaaatctttgcaaatttattaaaaataaaaaacaaaaaaaagcacatgtacataagtattcacagcctttgccatgacactcaaaattgagctcaggtgcatcctgtttccactgatcatccttgagatgtttctacaacttgattggagtccacctgtggtaaattcagttgattggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112527 lncRNA downstream 458 2939250 ~ 2939477 (-) True G90243
TU112509 lncRNA downstream 103137 2836519 ~ 2836798 (-) True G90226
TU112506 lncRNA downstream 211585 2725184 ~ 2728350 (-) True AMCG00017426
TU112503 lncRNA downstream 217637 2721426 ~ 2722298 (-) True G90221
TU112428 lncRNA downstream 475676 2373110 ~ 2464259 (-) True G90157
TU112536 lncRNA upstream 414922 3355065 ~ 3355489 (-) True G90252
TU112539 lncRNA upstream 464343 3404486 ~ 3404766 (-) True G90255
TU112567 lncRNA upstream 732152 3672295 ~ 3685214 (-) True G90281
TU112574 lncRNA upstream 1014745 3954888 ~ 3955136 (-) True G90287
TU112576 lncRNA upstream 1101544 4041687 ~ 4041894 (-) True G90289
AMCG00017426 mRNA downstream 98041 2711302 ~ 2841894 (-) False AMCG00017426
AMCG00017418 mRNA downstream 324373 2601783 ~ 2615562 (-) True AMCG00017418
AMCG00017417 mRNA downstream 373658 2528915 ~ 2566277 (-) True AMCG00017417
AMCG00017414 mRNA downstream 512808 2076178 ~ 2427127 (-) True AMCG00017414
AMCG00017406 mRNA downstream 907719 2023432 ~ 2032216 (-) True AMCG00017406
AMCG00017430 mRNA upstream 489478 3429621 ~ 3487525 (-) True AMCG00017430
AMCG00017431 mRNA upstream 589540 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017434 mRNA upstream 797670 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017432 mRNA upstream 836351 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017437 mRNA upstream 967309 3907452 ~ 3908488 (-) True AMCG00017437
TU112472 other downstream 324411 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 2588149 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 2834050 105685 ~ 105885 (-) True G89804
TU112697 other upstream 1602632 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 2218241 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 2218241 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 2282330 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 3447109 6387252 ~ 6389038 (-) True G90715

Expression Profile