RNA id: TU112574


Basic Information

Item Value
RNA id TU112574
length 249
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G90287
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 3954888 ~ 3955136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccaatccatggaggccccacctcgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggcggcaaaagggggacctacacaatattaggcaggtggtcataatgttatggctgatcggtgtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112567 lncRNA downstream 269674 3672295 ~ 3685214 (-) True G90281
TU112539 lncRNA downstream 550122 3404486 ~ 3404766 (-) True G90255
TU112536 lncRNA downstream 599399 3355065 ~ 3355489 (-) True G90252
TU112528 lncRNA downstream 1014745 2939935 ~ 2940143 (-) True G90244
TU112527 lncRNA downstream 1015411 2939250 ~ 2939477 (-) True G90243
TU112576 lncRNA upstream 86551 4041687 ~ 4041894 (-) True G90289
TU112594 lncRNA upstream 247471 4202607 ~ 4202807 (-) True G90307
TU112643 lncRNA upstream 391850 4346986 ~ 4347291 (-) True G90354
TU112644 lncRNA upstream 392958 4348094 ~ 4348312 (-) True G90355
TU112634 lncRNA upstream 429447 4384583 ~ 4390490 (-) True G90345
AMCG00017438 mRNA downstream 45676 3908513 ~ 3909212 (-) True AMCG00017438
AMCG00017437 mRNA downstream 46400 3907452 ~ 3908488 (-) True AMCG00017437
AMCG00017432 mRNA downstream 155416 3776494 ~ 3799472 (-) True AMCG00017432
AMCG00017434 mRNA downstream 207045 3737813 ~ 3747843 (-) True AMCG00017434
AMCG00017431 mRNA downstream 415492 3529683 ~ 3539396 (-) True AMCG00017431
AMCG00017436 mRNA upstream 248550 4203686 ~ 4204261 (-) True AMCG00017436
AMCG00017435 mRNA upstream 287312 4242448 ~ 4270086 (-) True AMCG00017435
AMCG00017433 mRNA upstream 326348 4281484 ~ 4299779 (-) True AMCG00017433
AMCG00017442 mRNA upstream 455746 4410882 ~ 4439595 (-) True AMCG00017442
AMCG00017444 mRNA upstream 505383 4460519 ~ 4461277 (-) True AMCG00017444
TU112472 other downstream 1339364 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 3603102 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 3849003 105685 ~ 105885 (-) True G89804
TU112697 other upstream 587639 4542775 ~ 4544760 (-) True G90400
TU112828 other upstream 1203248 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 1203248 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 1267337 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 2432116 6387252 ~ 6389038 (-) True G90715

Expression Profile