RNA id: TU112625


Basic Information

Item Value
RNA id TU112625
length 214
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G90337
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4330370 ~ 4330583 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGAAGAAGGTCAAAAAGgttaacatttcaaaaatgcatttttgtttttgtgaaaaaacatggtagtagtgtaatatagtttgtctaatcatgatcaactatgcagaatattatagtacagtttgtctaATTTCATTTGATacgtgtcacatacctgtactccttataatgtccatattaaacacttaCGCGTCTAAGAAGTTCCAACCAGG

Function

GO:

id name namespace
GO:0003997 acyl-CoA oxidase activity molecular_function
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112621 lncRNA upstream 17895 4312258 ~ 4312475 (+) True G90333
TU112571 lncRNA upstream 432245 3897818 ~ 3898125 (+) True G90284
TU112532 lncRNA upstream 1092644 3237445 ~ 3237726 (+) True G90248
TU112419 lncRNA upstream 1801569 2491907 ~ 2528801 (+) True G90149
TU112409 lncRNA upstream 1826206 2461882 ~ 2504164 (+) True G90144
TU112626 lncRNA downstream 54658 4385241 ~ 4390541 (+) True G90338
TU112680 lncRNA downstream 266208 4596791 ~ 4606571 (+) True AMCG00017445
TU112713 lncRNA downstream 367355 4697938 ~ 4710074 (+) True G90413
TU112743 lncRNA downstream 570439 4901022 ~ 4910792 (+) True G90436
TU112786 lncRNA downstream 758010 5088593 ~ 5098887 (+) True G90475
AMCG00017429 mRNA upstream 130916 4189248 ~ 4199454 (+) True AMCG00017429
AMCG00017428 mRNA upstream 761650 3567260 ~ 3568720 (+) True AMCG00017428
AMCG00017427 mRNA upstream 848648 3275663 ~ 3481722 (+) True AMCG00017427
AMCG00017423 mRNA upstream 1603543 2713157 ~ 2726827 (+) True AMCG00017423
AMCG00017420 mRNA upstream 1617897 2709071 ~ 2712473 (+) True AMCG00017420
AMCG00017439 mRNA downstream 52749 4383332 ~ 4384747 (+) True AMCG00017439
AMCG00017445 mRNA downstream 262219 4592802 ~ 4599888 (+) False AMCG00017445
AMCG00017449 mRNA downstream 297632 4628215 ~ 4633610 (+) True AMCG00017449
AMCG00017446 mRNA downstream 332042 4662625 ~ 4688223 (+) False AMCG00017446
AMCG00017450 mRNA downstream 359295 4689878 ~ 4691955 (+) True AMCG00017450
TU112484 other upstream 1634917 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 1634917 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 4118434 207586 ~ 211936 (+) True AMCG00017388
TU111992 other upstream 4231987 69898 ~ 98383 (+) False AMCG00017386
TU112690 other downstream 332076 4662659 ~ 4667830 (+) True AMCG00017446
TU113125 other downstream 2399155 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 2399155 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 2399155 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 2399155 6729738 ~ 7184790 (+) False AMCG00017486

Expression Profile