RNA id: TU112697


Basic Information

Item Value
RNA id TU112697
length 514
RNA type TUCP
GC content 0.46
exon number 2
gene id G90400
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4542775 ~ 4544760 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAATATGCTATTATATAGATACGGAGTAAAGCGCCACCGGAACTCCGTGCAATCCCACGATGCACCGCGTCTCAAAGGCGGAAGAAAAGGGGAAGTTGGCTACCTTCTTGAGATACAGCAGTGGTCCTCAACATATAGTTAAAATGGAATAATGAATGGCTAACTTGTGTGAATTCGCAGAAATAATTAAGTTGTCGAGGGAAGGATGGGTAGACAACAGCATAGAAAGAGGGTGCTTACTAACAACAGCAAAGATGGGAGTGACACGATCCCCAACagaaaggaggagaagaaaaaggacATTGCCAACTCAATCTTCCTTCacaaggagaaaaagaaaaaactaaatgtgggACAGCTCTTTATCAACATTTCCATCGGGCTGTGCATCTTCAGCTTGATATGGTTCTTCTACGCCCTCTACATGCGCTCATACCTGGCCAAGCGGATCATCACCCCTCACCCCTCTGACAAAATCCTCCATCCCAATAGCACCAGTGCCGCTGTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112634 lncRNA downstream 152285 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 194463 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 195484 4346986 ~ 4347291 (-) True G90354
TU112594 lncRNA downstream 339968 4202607 ~ 4202807 (-) True G90307
TU112576 lncRNA downstream 500881 4041687 ~ 4041894 (-) True G90289
TU112709 lncRNA upstream 118076 4662836 ~ 4665167 (-) True G90411
TU112750 lncRNA upstream 384626 4929386 ~ 4937166 (-) True G90443
TU112856 lncRNA upstream 711329 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 810502 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 1132139 5676899 ~ 5677249 (-) True G90648
AMCG00017440 mRNA downstream 30566 4510419 ~ 4512209 (-) True AMCG00017440
AMCG00017444 mRNA downstream 81498 4460519 ~ 4461277 (-) True AMCG00017444
AMCG00017442 mRNA downstream 103180 4410882 ~ 4439595 (-) True AMCG00017442
AMCG00017433 mRNA downstream 242996 4281484 ~ 4299779 (-) True AMCG00017433
AMCG00017435 mRNA downstream 272689 4242448 ~ 4270086 (-) True AMCG00017435
AMCG00017443 mRNA upstream 14145 4558905 ~ 4584957 (-) True AMCG00017443
AMCG00017447 mRNA upstream 56744 4601504 ~ 4620068 (-) True AMCG00017447
AMCG00017448 mRNA upstream 98936 4643696 ~ 4661158 (-) True AMCG00017448
AMCG00017453 mRNA upstream 147373 4692133 ~ 4861977 (-) True AMCG00017453
AMCG00017452 mRNA upstream 331751 4876511 ~ 4884349 (-) True AMCG00017452
TU112472 other downstream 1927251 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4190989 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4436890 105685 ~ 105885 (-) True G89804
TU112828 other upstream 613624 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 613624 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 677713 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1842492 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 2343962 6888722 ~ 6914790 (-) False G90746

Expression Profile