RNA id: TU112709


Basic Information

Item Value
RNA id TU112709
length 2312
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G90411
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4662836 ~ 4665167 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTcaacagatttgaaatgagtgtatattttcaaaaataaattaaattcacaaattaaaacatcaaataatgtgttaataatgtgttttcaatatagtatagggtgaattgaattttcaaatgactctttgtttttttgcattttccatactgtcccaactttttcggaattggggttgtattaCAAGTAAGCACATAAAAGACTAGTCCATGATATAATGCTTTTGTATCATCTGTTCCATTGGCTTTGCTATATTAACTTTACATGTTTCTTATTAAAAGGATGAATTGTACCTTTAATTAACTGAACTGTACCTTTCTAGCTTTCAGTAACTAAGGTAAAGTTTTAAGGTAAAGTACTCACATTAGTTAGGGAGTGCAATGTTTGTACACATGGGAACACTTTTAACTAACATCTTCCTCACAAAcactctcagtctctctctttctcgggAGATTTCTCTGTGGGAAATGATTTCATGTAGCATGCCATGAAGTAATAGCTTGCTGGTATGCAGTGCCAAAGCTGAAAACCCTTTCTGCCACtgtgttacaaaaaaataagacgAAAAAACACAGGCCCCAACCATTTCTTCAAGGTCACACGTCACTTGGCTTTCACAGTTTGTGCTTCGCTAGAAAATAAGTGAACGCTGAAAGGCTGAGCCATGAAAGGAAAACGCCAGCTGTTCACAACAGACATGTCTTATACAGCAAGAAGGAAATTGGATTGATTAAGGTGCAGGACTTTGCTTTTGGAATTACGACTAAGATTTTGGATAGTGGACATTGTATGAttgctgtttgtcttgtttgcattattattagttatcTGTAGGATAGGGACCTGTTTcctgtgtttagtttaggcttgagagtctgtatttttgtttgagaACGGcacactatataaaataaacctcaCTTTGATACATAACCCAGACTCTCTGTTTTCTGAGATCCCCAGTACTGGGTCCAACCCACCACAGTACTATCAACAGTCAGGACTTTTGTGGGAGCATTTACCCTTGAGTCCAGGTTGAAGGCTGTCTTCTTTAAGTCCTGTAGCGCCCTCTGCATGAATTCAAATGCATGGCAGTCAACACAGGGACGACCTGGAGCAAAGAAAGACAGTTGGGTCTGCTTCAGTGATCTTACTATCTGTTATCCAGGCTTACAACTCCCACTTGTCAGTTACTCTGCACACTAACCCCAACAATGATCTTAAATATATGGAGGCAAAATAACAAACTGCACAGCTGatttaatgcacatttcttccagctgaaacaaataaagaaaaatatatatataaatcctcCTGTTAAGGATGtctaaagcacacacacacactggtggccaataatgtaacaataatacctaataaaaacaaatatagacaTTTTGGTACCCTGCACAATTATACAATCAGTGTGTTATCAGTCACTTCCTTTGTTGACAATTTCCTCCATCAAATCATTATATGTTGAATGGTGCACCTGTGATTACAAGCATGCGCCTCTCCCTAAACAATATACAGCGTAAATACACGGCCATACACCATATACTCTTAATTCCCAACTTGCATACCCACTGACTTGTTGCTTTTAAGAATAGATCATAAAAACTACGTGCATCTATTTTAccatatgcaaaatacatacgagtacattataataaatacaaggcAATTAATAATGTCTCCTTAGCAACACGTATTGTTTCGTGCTTCTCCAAACCGTACTGCGATCTTGAATAATGGAGGCGGTGAACGGCCAATATTGCagcttacatacatacatacatacatacatacacgaCAGAATAATGCAATTTCATTCTTTATGACGAATGCATTGTTACGAGTGACAGTGAGACGGTGACAGCAGCGCCGCGACTCACTTTCCGCGGGGATGGCGGTGCCGCTGTCCGGGCTGGCGTCCCCCGGCCGGGCGCACAGcagccccagcagcagcagcagcagcgcggACACGGCGCTCACGGCCTGCGGGCGCACAGCGGGCATCGCGCCGCCTGGATGCGCTGCAATGTGACGGAAACGGGGATGATAATCCTACTTACCTTCACGTAGCGCAAAgcggaataaaacaaaatgaacaaccAGCGATGTAGCCTATCCAACGACCCGGGTATTTTAAAGCCTCATTGTGTAAAATGATTTACAGGATTATAGTTAATATTGCACTAAACAgtacaatgcaaatatttagCTAGCATGCTACACTATCACAAATCTTGAGCCCAAGATATTTCCCATGTTTCATACATCCATGATATGATGCTATCCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112634 lncRNA downstream 272346 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 314524 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 315545 4346986 ~ 4347291 (-) True G90354
TU112594 lncRNA downstream 460029 4202607 ~ 4202807 (-) True G90307
TU112576 lncRNA downstream 620942 4041687 ~ 4041894 (-) True G90289
TU112750 lncRNA upstream 264219 4929386 ~ 4937166 (-) True G90443
TU112856 lncRNA upstream 590922 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 690095 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 1011732 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 1114713 5779880 ~ 5780526 (-) True G90670
AMCG00017448 mRNA downstream 1678 4643696 ~ 4661158 (-) True AMCG00017448
AMCG00017447 mRNA downstream 42768 4601504 ~ 4620068 (-) True AMCG00017447
AMCG00017443 mRNA downstream 77879 4558905 ~ 4584957 (-) True AMCG00017443
AMCG00017441 mRNA downstream 111954 4537971 ~ 4550882 (-) True AMCG00017441
AMCG00017440 mRNA downstream 150627 4510419 ~ 4512209 (-) True AMCG00017440
AMCG00017453 mRNA upstream 26966 4692133 ~ 4861977 (-) True AMCG00017453
AMCG00017452 mRNA upstream 211344 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017455 mRNA upstream 241647 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017460 mRNA upstream 305241 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017458 mRNA upstream 387125 5052292 ~ 5067312 (-) True AMCG00017458
TU112697 other downstream 118076 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2047312 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4311050 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4556951 105685 ~ 105885 (-) True G89804
TU112828 other upstream 493217 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 493217 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 557306 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1722085 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 2223555 6888722 ~ 6914790 (-) False G90746

Expression Profile