RNA id: TU112713


Basic Information

Item Value
RNA id TU112713
length 1712
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G90413
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4697938 ~ 4710074 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGTGAGAGAAagagatgctTCTCTAGCAGAAGAATGTAAGGGTATCATCAGTGTCTGTCTATGAGTGTCTCacggtgttttttttcttttatgcatttaattctgtgcataaatatgcatatgtaCTGGGCGTGTATAtctatgtacatgtatatgatTGATTGATGATTTTGAAGTAACATTGCCAAAGGTTTCGGTATTTTGCTTTGGATGGTTTTAGTCATATCTAGCTTGCACATCAGTGTATGCTTTAGATttgctatgtgtgtgtgtatgtgtatatatttatgtatatatagtcaTTCTTTGCATTTCAGGCGCCTTTGCCATCTAATCTagcaataaaatgaataatgacatAAAGAAACACATTCTTGGTTCTAATGTCACTGCTACAAGGATAACAATTGCTTTTCCACTTAAAAGGTAACCCTGTATAATATCCGTGATCGGTGTGGTTGATGAGGGGCAGCAGCACCAACAGCCCCACTGAGTTTTGAAGAAAGAAGTTTgctttttgcattatttttaagaagAGATGTGTCTTTTTGactgtgaatttaaattatacaatataaaatgtattactgcaTGGTTAAAATCAATACTAAcatctaaataacatttaaataaagtgttgtAGTGTTATTAGCACTAAATGTCATTTCTAAAAGTCTGAACAGCTAACCTACATCTATAATGGGTATTCCTCAGGCTCTCGTTATTGGAACCAGCAGACAGAATTCTCTAAACTGATTAGAGCTTTTATGTACAAATTTGCTGTTTATAGTGGTATTGCCACAGAGTGCTAAAATATGATATTAATTTTGATACAAGCACGCTGTAAAACATGCAGATTCAGACTTAAAACTCtatcatgtttctttttttcttttgtttaaatgtaacaaatgtaaagtgtaaattgtattgtactgtaaataGCACGCGGAATATTTGATGATCTTTTTGTAACAGACcctgtagagagagaggagaaacaaTATCTAAAGAAGTTTACAAACACATTCACTtatcaaaagacaaaacaaaacaaaaccattcatatttaacaacTTCCCCAAAACTTTTAGAAATGACATTAGCCTCTTAACGCTATGCATGCACCATGGGCATGCAAGTCACACTTCTTAAAGCTCTGTTGGTTCTTGCCTAGTGATACGCAAAACCAGACAATATCCTGCTTTTGTTACTGTAGCTCAGAATCCCATTCTCCTGTAGTATTTGTACACTGGACGCTCCTTGCTATAAACTCCTAGAGTGTATGTGTTCAGGAGGAAATTAACTCATGCAAAGTACAGAGGTAGTGCGATTTGTATCCACTTCAGGAAGCTGCCTGATGGCCACAGCGACTGGGAGAATCGCCAGGGCATACGATGGCCTTGTGTGTTTGCTGAGATGGCTTGGTTTTTTGGGGTTATTTTGGTTCCGTTTTTCTTTAacaattgttttagtttttttaattattattctttattttattttaattttttttataaaagggATCATTGTAAAGATGTAAAGATGATTTCTTGCACTATGAAAGCAATGgatgtaaataatgtatcaataaaaatgaaagctcGTATATATGTGGTAACCAGGTGCTTTCTTTGAACCCAGGAGGAATTCACTCTTTTCAGAGATCTTGCAGCTAAAGGTATAAGCTAAAGCAATATACAAAAAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112680 lncRNA upstream 91367 4596791 ~ 4606571 (+) True AMCG00017445
TU112626 lncRNA upstream 307397 4385241 ~ 4390541 (+) True G90338
TU112625 lncRNA upstream 367355 4330370 ~ 4330583 (+) True G90337
TU112621 lncRNA upstream 385463 4312258 ~ 4312475 (+) True G90333
TU112571 lncRNA upstream 799813 3897818 ~ 3898125 (+) True G90284
TU112743 lncRNA downstream 190948 4901022 ~ 4910792 (+) True G90436
TU112786 lncRNA downstream 378519 5088593 ~ 5098887 (+) True G90475
TU112788 lncRNA downstream 381594 5091668 ~ 5138775 (+) True G90477
TU112790 lncRNA downstream 381594 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA downstream 418713 5128787 ~ 5222752 (+) False G90477
AMCG00017450 mRNA upstream 5983 4689878 ~ 4691955 (+) True AMCG00017450
AMCG00017446 mRNA upstream 9715 4662625 ~ 4688223 (+) False AMCG00017446
AMCG00017449 mRNA upstream 64328 4628215 ~ 4633610 (+) True AMCG00017449
AMCG00017445 mRNA upstream 98050 4592802 ~ 4599888 (+) False AMCG00017445
AMCG00017439 mRNA upstream 313191 4383332 ~ 4384747 (+) True AMCG00017439
AMCG00017451 mRNA downstream 151300 4861374 ~ 4868470 (+) True AMCG00017451
AMCG00017454 mRNA downstream 174887 4884961 ~ 4900663 (+) True AMCG00017454
AMCG00017457 mRNA downstream 299107 5009181 ~ 5048242 (+) True AMCG00017457
AMCG00017456 mRNA downstream 522394 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017464 mRNA downstream 620682 5330756 ~ 5351825 (+) True AMCG00017464
TU112690 other upstream 30108 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2002485 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2002485 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 4486002 207586 ~ 211936 (+) True AMCG00017388
TU111992 other upstream 4599555 69898 ~ 98383 (+) False AMCG00017386
TU113125 other downstream 2019664 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 2019664 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 2019664 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 2019664 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 2094670 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile