RNA id: TU112750


Basic Information

Item Value
RNA id TU112750
length 441
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G90443
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 4929386 ~ 4937166 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTTGGCTGGAAGTCCCCCAGATTCCGAACAGAGCAGTTCCAATTGACctcactgattttatttttagtttgtttttttattattttttttactacagagtttttgtgtgtatataaaatatctatttttaatagCAAGACATCAACATGGAGCTGAATTCTCTCCTAATTCTCCTGGAGGCAGCAGAATATTTGGAAAGAAGAGACCGAGAAGCAGAACATGGTTATGCATCAGTTTTACCGTACAATAGCGACTTTTCCAGAAAGAAAACGAAAGCCTCGCCAATTTCAAGAAAAACTCCGAACAATAGGTCATCACACAATGAGCTTGAAAAACACAGAAGTTTAGGCTATTTGCaagctcctctctctcctctgctgtTGTTCCTGCCTTACCCTGGAGCTGTTCCCTGGTCCCAGCACTGTCTTTTGACCTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112709 lncRNA downstream 264219 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 538896 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 581074 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 582095 4346986 ~ 4347291 (-) True G90354
TU112594 lncRNA downstream 726579 4202607 ~ 4202807 (-) True G90307
TU112856 lncRNA upstream 318923 5256089 ~ 5256406 (-) True G90520
TU112880 lncRNA upstream 418096 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 739733 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 842714 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 1453719 6390885 ~ 6391229 (-) True G90716
AMCG00017455 mRNA downstream 15307 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017452 mRNA downstream 45037 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017453 mRNA downstream 67409 4692133 ~ 4861977 (-) True AMCG00017453
AMCG00017448 mRNA downstream 268228 4643696 ~ 4661158 (-) True AMCG00017448
AMCG00017447 mRNA downstream 309318 4601504 ~ 4620068 (-) True AMCG00017447
AMCG00017460 mRNA upstream 33242 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017458 mRNA upstream 115126 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017459 mRNA upstream 271767 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017466 mRNA upstream 467678 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017467 mRNA upstream 523899 5461065 ~ 5465561 (-) True AMCG00017467
TU112697 other downstream 384626 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2313862 2608689 ~ 2615524 (-) False AMCG00017418
TU112073 other downstream 4577600 245930 ~ 351786 (-) False AMCG00017384
TU112008 other downstream 4823501 105685 ~ 105885 (-) True G89804
TU112828 other upstream 221218 5158384 ~ 5221021 (-) False G90501
TU112835 other upstream 221218 5158384 ~ 5221021 (-) True G90501
TU112836 other upstream 285307 5222473 ~ 5223047 (-) True G90502
TU113104 other upstream 1450086 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1951556 6888722 ~ 6914790 (-) False G90746

Expression Profile