RNA id: TU112786


Basic Information

Item Value
RNA id TU112786
length 366
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G90475
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5088593 ~ 5098887 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcaggaactgggagactagtcaggatcgagggaaagatgaatgcagagacatccttgatgaaaacctgctccagagcgctctggacctcagactggggcgaaggttcatcttccaacaggacaatgaccctaagcacacagccaagataacaaaggagtggctacaggacaactctgtaaatgtccttgagtggcccagccagagcccagactcgaacccgattgaacatctctggagagatctgaaaatggctgtgcaccgacactccccatccaacctgatggagcttgagaggtcctgcaaagaagaatgggagaaactgcccaaaaataggtgtgctaagcttgtagcatcatactcaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112743 lncRNA upstream 177801 4901022 ~ 4910792 (+) True G90436
TU112713 lncRNA upstream 378519 4697938 ~ 4710074 (+) True G90413
TU112680 lncRNA upstream 482022 4596791 ~ 4606571 (+) True AMCG00017445
TU112626 lncRNA upstream 698052 4385241 ~ 4390541 (+) True G90338
TU112625 lncRNA upstream 758010 4330370 ~ 4330583 (+) True G90337
TU112794 lncRNA downstream 29900 5128787 ~ 5222752 (+) False G90477
TU112894 lncRNA downstream 306555 5405442 ~ 5407529 (+) True G90551
TU112895 lncRNA downstream 308761 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA downstream 312844 5411731 ~ 5412261 (+) True G90554
TU112908 lncRNA downstream 341325 5440212 ~ 5463064 (+) False G90561
AMCG00017457 mRNA upstream 40351 5009181 ~ 5048242 (+) True AMCG00017457
AMCG00017454 mRNA upstream 187930 4884961 ~ 4900663 (+) True AMCG00017454
AMCG00017451 mRNA upstream 220123 4861374 ~ 4868470 (+) True AMCG00017451
AMCG00017450 mRNA upstream 396638 4689878 ~ 4691955 (+) True AMCG00017450
AMCG00017446 mRNA upstream 400370 4662625 ~ 4688223 (+) False AMCG00017446
AMCG00017456 mRNA downstream 133581 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017464 mRNA downstream 231869 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017463 mRNA downstream 256875 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017462 mRNA downstream 274470 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017465 mRNA downstream 279572 5378459 ~ 5379148 (+) True AMCG00017465
TU112690 other upstream 420763 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2393140 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2393140 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 4876657 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 4990210 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1630851 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1630851 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1630851 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1630851 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1705857 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile