RNA id: TU112794


Basic Information

Item Value
RNA id TU112794
length 437
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G90477
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5091668 ~ 5222752 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttTTGAAGCTCAGTGTGTATTTTCAGTGAAGCTCCACAGGCCCATGTTATTGTCTTCACCCTCCACACCTGCAGTCTCTGTGCAGTTCAGCTGAGGGAGGTTTTTGTACGGCTGTGTAGCACTGTgttaacacatacacactgttaGGATAGTGTAAACTCTGACAGTAGTAATCTCCTGTATCTTCAGGCTGGACTCCACTGATGGTCAGGGTGAAGTCAGTCCCAGATCCACTGCCACTGAATCGCTCTGGGATCCCAGACTGACGGGTAGTGGCAGCATAGATCAGGAGTTTAGGAGCTTCTCCAGGTTTCTGTTGGTACCAGTTTAGCCACTGTCCATTAGAATCACTGTACACTGGACTGCTGACTTTACAGTTCACAGTGACTGTCTCTCCTCGGTTAACAGATTTCACTGATGGAGTCCGAGTCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112786 lncRNA upstream 29900 5088593 ~ 5098887 (+) True G90475
TU112743 lncRNA upstream 217995 4901022 ~ 4910792 (+) True G90436
TU112713 lncRNA upstream 418713 4697938 ~ 4710074 (+) True G90413
TU112680 lncRNA upstream 522216 4596791 ~ 4606571 (+) True AMCG00017445
TU112626 lncRNA upstream 738246 4385241 ~ 4390541 (+) True G90338
TU112894 lncRNA downstream 182690 5405442 ~ 5407529 (+) True G90551
TU112895 lncRNA downstream 184896 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA downstream 188979 5411731 ~ 5412261 (+) True G90554
TU112908 lncRNA downstream 217460 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA downstream 238515 5461267 ~ 5463064 (+) True G90561
AMCG00017457 mRNA upstream 80545 5009181 ~ 5048242 (+) True AMCG00017457
AMCG00017454 mRNA upstream 228124 4884961 ~ 4900663 (+) True AMCG00017454
AMCG00017451 mRNA upstream 260317 4861374 ~ 4868470 (+) True AMCG00017451
AMCG00017450 mRNA upstream 436832 4689878 ~ 4691955 (+) True AMCG00017450
AMCG00017446 mRNA upstream 440564 4662625 ~ 4688223 (+) False AMCG00017446
AMCG00017456 mRNA downstream 9716 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017464 mRNA downstream 108004 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017463 mRNA downstream 133010 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017462 mRNA downstream 150605 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017465 mRNA downstream 155707 5378459 ~ 5379148 (+) True AMCG00017465
TU112690 other upstream 460957 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2433334 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2433334 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 4916851 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5030404 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1506986 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1506986 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1506986 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1506986 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1581992 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU542996 False 500 lncRNA 0.42 3 CI01000329 631860 ~ 652978 (-)