RNA id: TU112856


Basic Information

Item Value
RNA id TU112856
length 318
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G90520
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5256089 ~ 5256406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAAGATAGATGCATTGTTTTCACAGTTCCTCCAAAGATTTGTTGACAAGGAAGACATGAGCAAGCCAGTGTGCCAGCTATTAAgcctattattatattatattatattattatattgccTCAATATTTTCCCATTGGGAAGTGAAATGTTGGGATAATACTCTTTCTGTCTGCTGAATTTATTATCTCTTTTTTTATCCCCAGATCACCTTTGGGTTTTGTTTCCTGATGTCTGTATGGTAATTGCCTCCGAGATTACTGTGGATGTTGTAAAACACGCTTTTATTACAAAGTTTAACGACATTACAGCAGATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112750 lncRNA downstream 318923 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 590922 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 865599 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 907777 4348094 ~ 4348312 (-) True G90355
TU112643 lncRNA downstream 908798 4346986 ~ 4347291 (-) True G90354
TU112880 lncRNA upstream 98856 5355262 ~ 5356316 (-) True G90540
TU113031 lncRNA upstream 420493 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 523474 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 1134479 6390885 ~ 6391229 (-) True G90716
TU113106 lncRNA upstream 1139242 6395648 ~ 6395865 (-) True G90717
AMCG00017459 mRNA downstream 46272 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017458 mRNA downstream 188777 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017460 mRNA downstream 245987 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017455 mRNA downstream 342010 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017452 mRNA downstream 371740 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017466 mRNA upstream 148438 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017467 mRNA upstream 204659 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017468 mRNA upstream 210654 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017469 mRNA upstream 235030 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017473 mRNA upstream 508164 5764570 ~ 5767143 (-) True AMCG00017473
TU112836 other downstream 33042 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 35068 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 35068 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 711329 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2640565 2608689 ~ 2615524 (-) False AMCG00017418
TU113104 other upstream 1130846 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1632316 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 1856030 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 2574479 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 2735731 7992137 ~ 7996595 (-) True G90939

Expression Profile