RNA id: TU112880


Basic Information

Item Value
RNA id TU112880
length 249
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G90540
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5355262 ~ 5356316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATTCATAACTAGcgactgcaaaaacaaaaaaggaatttaCACAGCTCTGCAGCTGGACAATATCTTCAACATCAGTGATTTCTTAAACACAAGTATGTACACCAAGGATGTGGTTGACATGTTTGACAAGGTCAATGTGGATCTCAGTGACATAACACTTCTGGATGCTGCAGGAAAGCAGAATCTTCAGAGTTTTACAAATACTGGCATTGGCAACATTGACTACCCAGCTTATTTGGCAGAGGT

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112856 lncRNA downstream 98856 5256089 ~ 5256406 (-) True G90520
TU112750 lncRNA downstream 418096 4929386 ~ 4937166 (-) True G90443
TU112709 lncRNA downstream 690095 4662836 ~ 4665167 (-) True G90411
TU112634 lncRNA downstream 964772 4384583 ~ 4390490 (-) True G90345
TU112644 lncRNA downstream 1006950 4348094 ~ 4348312 (-) True G90355
TU113031 lncRNA upstream 320583 5676899 ~ 5677249 (-) True G90648
TU113053 lncRNA upstream 423564 5779880 ~ 5780526 (-) True G90670
TU113105 lncRNA upstream 1034569 6390885 ~ 6391229 (-) True G90716
TU113106 lncRNA upstream 1039332 6395648 ~ 6395865 (-) True G90717
TU113107 lncRNA upstream 1040312 6396628 ~ 6396891 (-) True G90718
AMCG00017459 mRNA downstream 145445 5208933 ~ 5209817 (-) True AMCG00017459
AMCG00017458 mRNA downstream 287950 5052292 ~ 5067312 (-) True AMCG00017458
AMCG00017460 mRNA downstream 345160 4970408 ~ 5010102 (-) True AMCG00017460
AMCG00017455 mRNA downstream 441183 4906814 ~ 4914079 (-) True AMCG00017455
AMCG00017452 mRNA downstream 470913 4876511 ~ 4884349 (-) True AMCG00017452
AMCG00017466 mRNA upstream 48528 5404844 ~ 5425674 (-) True AMCG00017466
AMCG00017467 mRNA upstream 104749 5461065 ~ 5465561 (-) True AMCG00017467
AMCG00017468 mRNA upstream 110744 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017469 mRNA upstream 135120 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017473 mRNA upstream 408254 5764570 ~ 5767143 (-) True AMCG00017473
TU112836 other downstream 132215 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 134241 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 134241 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 810502 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 2739738 2608689 ~ 2615524 (-) False AMCG00017418
TU113104 other upstream 1030936 6387252 ~ 6389038 (-) True G90715
TU113210 other upstream 1532406 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 1756120 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 2474569 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 2635821 7992137 ~ 7996595 (-) True G90939

Expression Profile