RNA id: TU112894



Basic Information


Item Value
RNA id TU112894
length 882
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G90551
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5405442 ~ 5407529 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGGTGTTACTGTCCTAagttaacataacattttaaatggaccATGGTGAATAAAGACAACAATTGACTGATATTGACCGAGAATAAAATGTCTTGATACAGCTTAAGACAGGTTTAAAGGCACAGGTCAAAGCTCTGAATAACCACTTCTAAAGAACATGCTTTCTGGAGTACAAAGTCACTGATAGCTTTTAGTACAATCCAAATACATGAATAGAATATCAAACTGTAACTAACTAATGCTTAATGACCACTGCAAAgcaagtattaaaatgaaaaacaaactgagcaTTATGTCGCACTTTGGTCCTTCAGTTGTGCAAGCTGTATGCATTTAGTATTATTAAACAAGTGCAGATAGAAAAGCACAGCAGAGCGCTCCTTCATACGGTATTGTTATGCGTCGTTCCCaccacagaggaggaggagggtctTCCTATAGTCACCAGATGTATCACCctgaatCACTGAATGAAGAGATGTTGCAAACATTTTCCTGAACTGTGCTCTGATGTCTAGCATGTCCACTTCACTTCTGGACACCATGATCCGGATCAGAGTCTTGTCATCAGTCCCAGCTCCCTCATTGCAAAGTAGAGGCTTTCAGCAAAGTATGCTGGAACACTCCTGGCACATTTCACAACAGCCAATAGCACACTTTTCAGCCCCCCTGAGGTTTCTCTTTCGATGCTTTCTTCAATCTCAAAACCAGAAATTGTCATGTACTTTTCAAAGACTGAAAGAGATTTAAAAGCAGAAAGACGTCATGCATAATCAAAACCTGAAATCTAAAATACTTACTCACTTTTTCAgaaggataaaaaataaaaaatctctaCAATGGACTCTAATTCCAGATCTTAAACAAGTGATACAGAAATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112790 lncRNA upstream 182690 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA upstream 182690 5128787 ~ 5222752 (+) False G90477
TU112788 lncRNA upstream 266667 5091668 ~ 5138775 (+) True G90477
TU112786 lncRNA upstream 306555 5088593 ~ 5098887 (+) True G90475
TU112743 lncRNA upstream 494650 4901022 ~ 4910792 (+) True G90436
TU112895 lncRNA downstream 119 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA downstream 4202 5411731 ~ 5412261 (+) True G90554
TU112908 lncRNA downstream 32683 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA downstream 53738 5461267 ~ 5463064 (+) True G90561
TU113030 lncRNA downstream 269372 5676901 ~ 5677244 (+) True G90647
AMCG00017465 mRNA upstream 26294 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017462 mRNA upstream 29988 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017463 mRNA upstream 34800 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017464 mRNA upstream 53617 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017456 mRNA upstream 132755 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017461 mRNA downstream 17902 5425431 ~ 5459702 (+) True AMCG00017461
AMCG00017470 mRNA downstream 130983 5538512 ~ 5624154 (+) True AMCG00017470
AMCG00017471 mRNA downstream 217495 5625024 ~ 5640242 (+) True AMCG00017471
AMCG00017474 mRNA downstream 372351 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017475 mRNA downstream 401299 5808828 ~ 5816998 (+) True AMCG00017475
TU112690 other upstream 737612 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2709989 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2709989 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5193506 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5307059 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1322209 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1322209 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1322209 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1322209 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1397215 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile