RNA id: TU112898


Basic Information

Item Value
RNA id TU112898
length 225
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G90554
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5411731 ~ 5412261 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTATAATTAATCTCAGTTAGTTCCAACTTTCCATCTTCTTGGTCCttggttttgtgtttcatgtgaagtatattacatttaaattcccttaaaaaaagataaacttGAAATGTGTGGGTGAGAGTACATTTCCTAAATGTACTAAATGCTACAACAAAAGCAACTTGTAAACTCTACCTTTTCTGGTTgcattaatgttttactttgatCTAGAATTGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112894 lncRNA upstream 4202 5405442 ~ 5407529 (+) True G90551
TU112790 lncRNA upstream 188979 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA upstream 188979 5128787 ~ 5222752 (+) False G90477
TU112788 lncRNA upstream 272956 5091668 ~ 5138775 (+) True G90477
TU112786 lncRNA upstream 312844 5088593 ~ 5098887 (+) True G90475
TU112908 lncRNA downstream 27951 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA downstream 49006 5461267 ~ 5463064 (+) True G90561
TU113030 lncRNA downstream 264640 5676901 ~ 5677244 (+) True G90647
TU113077 lncRNA downstream 565903 5978164 ~ 5978368 (+) True G90691
TU113092 lncRNA downstream 870896 6283157 ~ 6283441 (+) True G90703
AMCG00017465 mRNA upstream 32583 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017462 mRNA upstream 36277 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017463 mRNA upstream 41089 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017464 mRNA upstream 59906 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017456 mRNA upstream 139044 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017461 mRNA downstream 13170 5425431 ~ 5459702 (+) True AMCG00017461
AMCG00017470 mRNA downstream 126251 5538512 ~ 5624154 (+) True AMCG00017470
AMCG00017471 mRNA downstream 212763 5625024 ~ 5640242 (+) True AMCG00017471
AMCG00017474 mRNA downstream 367619 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017475 mRNA downstream 396567 5808828 ~ 5816998 (+) True AMCG00017475
TU112690 other upstream 743901 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2716278 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2716278 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5199795 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5313348 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1317477 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1317477 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1317477 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1317477 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1392483 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile