RNA id: TU112908


Basic Information

Item Value
RNA id TU112908
length 453
lncRNA type sense_over
GC content 0.37
exon number 3
gene id G90561
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5440212 ~ 5463064 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtttgtttttgtggttttgtTCACGGCAGCAATAGTTTTATTActgaagatttaaaatgtacaaattgacaacagattaaaaacaacccCTGCGAGATCTCCCAAAAGCAAGGGCATCAACGGGAACACTTTAGCAGTTAAAACAATGCCTGATTAACTAGGTTACAAAAGTTGCATCAAGCAAAAATAACCATACAAGAttgcacatttaataaaaaaaaatcccattcatGTTTACCATCGAAACACCTGTGGCATTCAGTTACCGAATTATTCTGGTCATAGTAGTGAcgtgtataaaaaaataaaagtacagaaaagtctcTCCatggtatacatttaaaactgcaaTATTTACACCAGGGTCAGTTTCTCGGGTGGCTCAACGGCAGAGACTTTCTGCAATGTAGACAAACTCGGCCACTTCTGGAGGGTAGATCTCTTCAAATTtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112895 lncRNA upstream 27523 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA upstream 27951 5411731 ~ 5412261 (+) True G90554
TU112894 lncRNA upstream 32683 5405442 ~ 5407529 (+) True G90551
TU112790 lncRNA upstream 217460 5091668 ~ 5222752 (+) False G90477
TU112794 lncRNA upstream 217460 5128787 ~ 5222752 (+) False G90477
TU113030 lncRNA downstream 213837 5676901 ~ 5677244 (+) True G90647
TU113077 lncRNA downstream 515100 5978164 ~ 5978368 (+) True G90691
TU113092 lncRNA downstream 820093 6283157 ~ 6283441 (+) True G90703
TU113098 lncRNA downstream 938670 6401734 ~ 6402188 (+) True G90709
TU113180 lncRNA downstream 1264968 6728032 ~ 6763072 (+) True G90731
AMCG00017465 mRNA upstream 61064 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017462 mRNA upstream 64758 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017463 mRNA upstream 69570 5355762 ~ 5370642 (+) True AMCG00017463
AMCG00017464 mRNA upstream 88387 5330756 ~ 5351825 (+) True AMCG00017464
AMCG00017456 mRNA upstream 167525 5232468 ~ 5272687 (+) True AMCG00017456
AMCG00017470 mRNA downstream 75448 5538512 ~ 5624154 (+) True AMCG00017470
AMCG00017471 mRNA downstream 161960 5625024 ~ 5640242 (+) True AMCG00017471
AMCG00017474 mRNA downstream 316816 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017475 mRNA downstream 345764 5808828 ~ 5816998 (+) True AMCG00017475
AMCG00017480 mRNA downstream 487772 5950836 ~ 5951792 (+) True AMCG00017480
TU112690 other upstream 772382 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2744759 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2744759 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5228276 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5341829 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1266674 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1266674 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1266674 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1266674 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1341680 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile