RNA id: TU113030


Basic Information

Item Value
RNA id TU113030
length 344
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G90647
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 5676901 ~ 5677244 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaggatgtctctgtacattgctgcattcatctttccctcgatcctgactagtctcccagttcctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtagggatggtattggccaggtgatgagcggtgcctggtttcctccagacatgagttcaatctttgtttcatcagaccagagaattttgtttctcatggtctgagagtccttcaggtgccttttggtaaactccaggcgggctgtcatgtgccttttactgaggagtggcttccgtctggccactctaccatacaggcctgattggtggagtgctgcagagatggttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112908 lncRNA upstream 213837 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA upstream 213837 5461267 ~ 5463064 (+) True G90561
TU112895 lncRNA upstream 264212 5407648 ~ 5412689 (+) True G90552
TU112898 lncRNA upstream 264640 5411731 ~ 5412261 (+) True G90554
TU112894 lncRNA upstream 269372 5405442 ~ 5407529 (+) True G90551
TU113077 lncRNA downstream 300920 5978164 ~ 5978368 (+) True G90691
TU113092 lncRNA downstream 605913 6283157 ~ 6283441 (+) True G90703
TU113098 lncRNA downstream 724490 6401734 ~ 6402188 (+) True G90709
TU113180 lncRNA downstream 1050788 6728032 ~ 6763072 (+) True G90731
TU113186 lncRNA downstream 1197723 6874967 ~ 6892610 (+) True G90737
AMCG00017471 mRNA upstream 36659 5625024 ~ 5640242 (+) True AMCG00017471
AMCG00017470 mRNA upstream 52747 5538512 ~ 5624154 (+) True AMCG00017470
AMCG00017461 mRNA upstream 217199 5425431 ~ 5459702 (+) True AMCG00017461
AMCG00017465 mRNA upstream 297753 5378459 ~ 5379148 (+) True AMCG00017465
AMCG00017462 mRNA upstream 301447 5373357 ~ 5375454 (+) True AMCG00017462
AMCG00017474 mRNA downstream 102636 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017475 mRNA downstream 131584 5808828 ~ 5816998 (+) True AMCG00017475
AMCG00017480 mRNA downstream 273592 5950836 ~ 5951792 (+) True AMCG00017480
AMCG00017477 mRNA downstream 635538 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017479 mRNA downstream 684115 6361359 ~ 6370652 (+) True AMCG00017479
TU112690 other upstream 1009071 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 2981448 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 2981448 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 5464965 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 5578518 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 1052494 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 1052494 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 1052494 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 1052494 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 1127500 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile