RNA id: TU113092



Basic Information


Item Value
RNA id TU113092
length 285
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G90703
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6283157 ~ 6283441 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttgccgccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtgagttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgatttgattgagatctggggaatttggaggccaagtcaacaccttgaactcatgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcac

Function


GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113077 lncRNA upstream 304789 5978164 ~ 5978368 (+) True G90691
TU113030 lncRNA upstream 605913 5676901 ~ 5677244 (+) True G90647
TU112908 lncRNA upstream 820093 5440212 ~ 5463064 (+) False G90561
TU112907 lncRNA upstream 820093 5461267 ~ 5463064 (+) True G90561
TU112895 lncRNA upstream 870468 5407648 ~ 5412689 (+) True G90552
TU113098 lncRNA downstream 118293 6401734 ~ 6402188 (+) True G90709
TU113180 lncRNA downstream 444591 6728032 ~ 6763072 (+) True G90731
TU113186 lncRNA downstream 591526 6874967 ~ 6892610 (+) True G90737
TU113187 lncRNA downstream 600213 6883654 ~ 6883957 (+) True G90738
TU113178 lncRNA downstream 661031 6944472 ~ 6990143 (+) False AMCG00017486
AMCG00017480 mRNA upstream 331365 5950836 ~ 5951792 (+) True AMCG00017480
AMCG00017475 mRNA upstream 466159 5808828 ~ 5816998 (+) True AMCG00017475
AMCG00017474 mRNA upstream 490652 5779880 ~ 5792505 (+) True AMCG00017474
AMCG00017471 mRNA upstream 642915 5625024 ~ 5640242 (+) True AMCG00017471
AMCG00017470 mRNA upstream 659003 5538512 ~ 5624154 (+) True AMCG00017470
AMCG00017477 mRNA downstream 29341 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017479 mRNA downstream 77918 6361359 ~ 6370652 (+) True AMCG00017479
AMCG00017478 mRNA downstream 98918 6382359 ~ 6400405 (+) True AMCG00017478
AMCG00017484 mRNA downstream 561118 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017483 mRNA downstream 561534 6844975 ~ 6846106 (+) True AMCG00017483
TU112690 other upstream 1615327 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 3587704 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 3587704 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 6071221 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 6184774 93120 ~ 98383 (+) True AMCG00017386
TU113125 other downstream 446297 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other downstream 446297 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other downstream 446297 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other downstream 446297 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other downstream 521303 6804744 ~ 7184790 (+) False AMCG00017486

Expression Profile