RNA id: TU113104


Basic Information

Item Value
RNA id TU113104
length 1787
RNA type TUCP
GC content 0.46
exon number 1
gene id G90715
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6387252 ~ 6389038 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTAGTCTACTTAATTTCAGGTTGATTATTTGGtcacttttttttcaaattagcaTACCTGAAAATTAAGTGTGAGACTGTAAACTAGCATCATctcttaaaacaaattaataaacatggcAAACTGGTATGATACCCTCCTTTAATCCTAAAAACTCTGGATGGCAACAGTTCTGCATTCACTTGCtggtgatttttctgtttttggatTTTAGGTGCAAAGCATGTAAGTATTTCTGGAAAAAACATCTGTCGTTTGGCTGCATGATAGATCTCTGTaagtttcattaaataaaacaatacctgTAAATCCAGATTTGCAGAGACAGTTGAAACCTCCTGGGAAATTCTGGCAAAGTGCCCCATTCTTGCAAGGGTTTGATAGGCACTCATTGACATCCCTCTCACAAGCCATTCCTGTGAATCCCTCTGGACAGCTGCAGGAAAACCCCCCAACCAGGTTGTGGCAGGTTCCACCGTTGTGGCAGGGAGACGGAAGGCACTCATCAATGTCAGTCTCACACAGGCTTCCGGCATATCCTGGCATGCAGTTACAGACGTAGGGCTGGAGAGGTTCGTTTGAAACGAGGATGACAGGGATGCTCTCCTCAGCCTTCATTTTGGGACTCACACTGAGGTGCTTCTTGCAGCTTCCTCTATTCTGACATgggctgtgtgtgcaggggtcATGGTCCACCGAGTCGATGCGCACTCCACTCTGCCTGTGAAGGATGTCTtttatactttcaaaaaacGTGGCTACTCCACTGGGGTTGACATACAGATTTTGGCCTCGCTTTACAGCAGCCATTAGGAAGGTCTTGTTATTTTGTTCAAAAGCCCCATAGAGCTGCACAGCAGTTCCCAGGCCAGCGAGCTGAGAGTTCGCTATGCGTAGGAAACTAAGATAGTTATTGGTGAAAAAGTCTCtaacattttgcacatttagACGGATTAAAATGCTGTTATCAACAGTGATGTTGTTAAATCCCACAAAGAAAACACGGATGTTGCTGTTGACAGCTCCGTGCACCCCATCACTGCTGCGAACTGTAAACTCAAAAGTCCCATCTGTAGACCTCGGATTGGAATTCAAATCGCATGTACCTGCAGTGATGCTGAAAAGATTTGGGACTGCTGACGTGAGAGAACAGCGGAAACTGTCCTGCACATCTGGGTCTTGTGGTTTCACGCTACCCAAACTTCCACCAGGAAACTGGTTACCAAAATAGTGGACAAAGATCTCCACTGTTCTAGCTTCTGACGGGTTGTCATTCTGGTCATTGACCTTGACGTGGACTGTTTCCGTGGAGGACATCTGTGGGACGCCCGAGTCCTTTGTCACCACTGACAGGTAGAAATCACTGATCTGCTCTCTGTCAATCTCTCTGCTCGTGCTCAGCACTCCTGCAGGACTAAGGCTGAAATAGCTTGTGGCAGATCCAGTGCTTTGTAAACTATATGTAAACGGTCCCTGGTTTGGAGGTAGATCGGGATCTGTAGAGCTAAGTTTCATTACAATGGTTCCTGCACGCTGATTCTCTGTCACCTCTCCTCTTGTCATGATCAGTGTGGGGCCATTGTCATTGATATCCTCTAATGTAACGATCAGGCTCGCACTCCCAGTAGCAGAAGGAGAACCGGAATCAACTGCCAGGACAGTCAGATTGTAAACAGGTGTGGACTCTCTATCAAGCTCTGCAGCTACTGAAACCTGACCTGTCTGGGGATTAATTGCAAAAGCATTTTTCTCATTATCAGAGCCCATGAAATAGGAGAACCTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113053 lncRNA downstream 606726 5779880 ~ 5780526 (-) True G90670
TU113031 lncRNA downstream 710003 5676899 ~ 5677249 (-) True G90648
TU112880 lncRNA downstream 1030936 5355262 ~ 5356316 (-) True G90540
TU112856 lncRNA downstream 1130846 5256089 ~ 5256406 (-) True G90520
TU112750 lncRNA downstream 1450086 4929386 ~ 4937166 (-) True G90443
TU113105 lncRNA upstream 1847 6390885 ~ 6391229 (-) True G90716
TU113106 lncRNA upstream 6610 6395648 ~ 6395865 (-) True G90717
TU113107 lncRNA upstream 7590 6396628 ~ 6396891 (-) True G90718
TU113113 lncRNA upstream 304695 6693733 ~ 6694106 (-) True G90724
TU113218 lncRNA upstream 344197 6733235 ~ 7184824 (-) False G90746
AMCG00017476 mRNA downstream 176250 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 578761 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017473 mRNA downstream 620109 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017469 mRNA downstream 867097 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017468 mRNA downstream 902794 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017482 mRNA upstream 329398 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017481 mRNA upstream 383784 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017485 mRNA upstream 587899 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017487 mRNA upstream 821320 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 903818 7292856 ~ 7299945 (-) True AMCG00017489
TU112836 other downstream 1164205 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1166231 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 1166231 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 1842492 4542775 ~ 4544760 (-) True G90400
TU112472 other downstream 3771728 2608689 ~ 2615524 (-) False AMCG00017418
TU113210 other upstream 499684 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 723398 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 1441847 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 1603099 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 2107457 8496495 ~ 8514955 (-) True AMCG00017520

Expression Profile