RNA id: TU113113


Basic Information

Item Value
RNA id TU113113
length 374
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G90724
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6693733 ~ 6694106 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaactaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatagttgttggtgccagacgggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggaaaaacatccagtatgcggcagtcctgtgggcgaaaatgccctgttgatgctagaggtcagaggagaatgggccgactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113107 lncRNA downstream 296842 6396628 ~ 6396891 (-) True G90718
TU113106 lncRNA downstream 297868 6395648 ~ 6395865 (-) True G90717
TU113105 lncRNA downstream 302504 6390885 ~ 6391229 (-) True G90716
TU113053 lncRNA downstream 913207 5779880 ~ 5780526 (-) True G90670
TU113031 lncRNA downstream 1016484 5676899 ~ 5677249 (-) True G90648
TU113218 lncRNA upstream 39129 6733235 ~ 7184824 (-) False G90746
TU113222 lncRNA upstream 39129 6733235 ~ 7184824 (-) False G90746
TU113235 lncRNA upstream 66549 6760655 ~ 6876968 (-) True G90751
TU113207 lncRNA upstream 108834 6802940 ~ 7184824 (-) False G90746
TU113208 lncRNA upstream 118015 6812121 ~ 7184824 (-) False G90746
AMCG00017476 mRNA downstream 482731 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 885242 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017473 mRNA downstream 926590 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017469 mRNA downstream 1173578 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017468 mRNA downstream 1209275 5467060 ~ 5484458 (-) True AMCG00017468
AMCG00017482 mRNA upstream 24330 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017481 mRNA upstream 78716 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017485 mRNA upstream 282831 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017487 mRNA upstream 516252 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 598750 7292856 ~ 7299945 (-) True AMCG00017489
TU113104 other downstream 304695 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1470686 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1472712 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 1472712 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 2148973 4542775 ~ 4544760 (-) True G90400
TU113210 other upstream 194616 6888722 ~ 6914790 (-) False G90746
TU113233 other upstream 418330 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 1136779 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 1298031 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1802389 8496495 ~ 8514955 (-) True AMCG00017520

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU227041 True 762 lncRNA 0.42 1 CI01000047 2428898 ~ 2429659 (+)
tiger barb (Puntius tetrazona) TU227041 False 397 lncRNA 0.36 2 NC_056720.1 16163383 ~ 16164196 (+)