RNA id: TU113187



Basic Information


Item Value
RNA id TU113187
length 277
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G90738
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6883654 ~ 6883957 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


agagacagaataacaacaaaaaaatccagaaaaacgcatttcaaaaaagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgatgtttggcaactcgaaccttcagctccctccacagattttctatgggattaagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113180 lncRNA upstream 120582 6728032 ~ 6763072 (+) True G90731
TU113098 lncRNA upstream 481466 6401734 ~ 6402188 (+) True G90709
TU113092 lncRNA upstream 600213 6283157 ~ 6283441 (+) True G90703
TU113077 lncRNA upstream 905286 5978164 ~ 5978368 (+) True G90691
TU113030 lncRNA upstream 1206410 5676901 ~ 5677244 (+) True G90647
TU113178 lncRNA downstream 60515 6944472 ~ 6990143 (+) False AMCG00017486
TU113182 lncRNA downstream 90704 6974661 ~ 7011061 (+) True G90733
TU113150 lncRNA downstream 126766 7010723 ~ 7188643 (+) False AMCG00017486
TU113192 lncRNA downstream 228459 7112416 ~ 7152744 (+) True G90743
TU113149 lncRNA downstream 301563 7185520 ~ 7188643 (+) True AMCG00017486
AMCG00017483 mRNA upstream 37548 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017484 mRNA upstream 38692 6844559 ~ 6844962 (+) True AMCG00017484
AMCG00017478 mRNA upstream 483249 6382359 ~ 6400405 (+) True AMCG00017478
AMCG00017479 mRNA upstream 513002 6361359 ~ 6370652 (+) True AMCG00017479
AMCG00017477 mRNA upstream 565767 6312782 ~ 6317887 (+) True AMCG00017477
AMCG00017486 mRNA downstream 296989 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017488 mRNA downstream 356486 7240443 ~ 7279492 (+) True AMCG00017488
AMCG00017491 mRNA downstream 575107 7459064 ~ 7475022 (+) True AMCG00017491
AMCG00017494 mRNA downstream 721331 7605288 ~ 7606199 (+) True AMCG00017494
AMCG00017496 mRNA downstream 758318 7642275 ~ 7647260 (+) True AMCG00017496
TU112690 other upstream 2215824 4662659 ~ 4667830 (+) True AMCG00017446
TU112484 other upstream 4188201 2687420 ~ 2695453 (+) True AMCG00017422
TU112485 other upstream 4188201 2687420 ~ 2695453 (+) False AMCG00017422
TU112033 other upstream 6671718 207586 ~ 211936 (+) True AMCG00017388
TU111993 other upstream 6785271 93120 ~ 98383 (+) True AMCG00017386
TU113128 other downstream 135261 7019218 ~ 7184790 (+) False AMCG00017486
TU113137 other downstream 135261 7019218 ~ 7184790 (+) False AMCG00017486
TU113171 other downstream 298129 7182086 ~ 7184790 (+) False AMCG00017486
TU113384 other downstream 784226 7668183 ~ 7671850 (+) True G90877
TU113388 other downstream 808628 7692585 ~ 7693347 (+) True G90881

Expression Profile