RNA id: TU113201


Basic Information

Item Value
RNA id TU113201
length 1225
lncRNA type sense_over
GC content 0.49
exon number 8
gene id G90746
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6733235 ~ 7188648 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaagtcattttttttaatacgttttatttcaatacctactgcaaaaaaacaagaaacgaACAATACAGAAACAGACTTTAAAAGACAAGAATTATGTAAAAGCAGGGGGGTTACACTAACACAGGCACTACTGCGACAATGTCAGACATGTGACTAAACATGGGTTGCTCCACTCTTTGCCTAGTCTCtccagagcgagagagaaagagagagacagcagtTTGGGCCTTCAGCTCCATTCAGGCTGTGTTGGGCTAAACGGTGCACTGACTCCTGCTGATGCTTTCTAGGATAGTGGCTCCCGCATGGCTCACTGTGCACCCGTATTTCTCCTTGGACACCCAGTCGCTCTTGGGCAACGTTAGAGTGCTGCTTCGGCTGTATTTGCCATTCTTGAGCTGCTCAGTGCTGGTCTGCACCCCGTTGGTGCGTTTTTGGCCATCTACCGTCCACTCCACAATGGCTCCCTCCGGTGAATAGTCGTTGAGTAGACACAGCAGAGTGGCCGAGTCCTTTGTGGAGATCTCGTTGGGCGAAGGGGGGAAAAGAGACACTGAAGGTTTCACTGTGGCAGTGGATCTGGGACTGACTTCACTCTGACCATCAGTGGAGTCCAGGCTGAAGATGCAGGAGATTACTACTGTCAGCAGCATGGCTGGACTCCACTGATGGTCAGAGTGAAGTCAGTCCCAGATCCACTGCCACTGAATCGCTCTGGGATCCCAGACTGACGGGTAGTGGCAGCATAGATCAGGAGTTTAGGAGCTTCTCCAGGTTTCTGTTGGTACCAGTGTAGGTAGTTGTTACTGTGTACTGCACTGCTGACTTTACAGTTCACAGTGATGGTCTCTCCTTGGTGAACAGATTTCACTGATGGAGTCTGAGTCACAGTGTACTGTCCACTGGATTTGAGTGCAGATGGCGAGAGCCCAGATGAAGATGGTGATaaaagtcattgttgttgtggattgtgttgccatgaagggcagTttacagtagtagtagttatgGTCACTACCTACACTGGTACCAACAGAAACCTGGAGAAGCTGCTAAACTCCTGATCTATCGTGCTACTAACCGTCAGTCTGGGATCCCGGAACGATTCAGTGGCAGTGGAGCTGGGACTGACTTCACACTGATCATCAGTGGAGTCCAGCCTGAAGATGCAGGAGATTACTACTGTCAGAGTTTCCACTATCCCAACAGTAAAGATGTGTtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113220 lncRNA downstream 65832 6858011 ~ 6908828 (-) False G90746
TU113243 lncRNA downstream 90692 6883642 ~ 6883968 (-) True G90759
TU113235 lncRNA downstream 97692 6760655 ~ 6876968 (-) True G90751
TU113113 lncRNA downstream 280554 6693733 ~ 6694106 (-) True G90724
TU113107 lncRNA downstream 577769 6396628 ~ 6396891 (-) True G90718
TU113271 lncRNA upstream 16972 7205620 ~ 7205861 (-) True G90783
TU113285 lncRNA upstream 33180 7221828 ~ 7226843 (-) True G90796
TU113297 lncRNA upstream 77419 7266067 ~ 7282477 (-) True G90805
TU113310 lncRNA upstream 135082 7323730 ~ 7324107 (-) True G90817
TU113391 lncRNA upstream 479532 7668180 ~ 7670591 (-) False AMCG00017497
AMCG00017481 mRNA downstream 200862 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017482 mRNA downstream 253267 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 763658 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 1166169 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017473 mRNA downstream 1207517 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017487 mRNA upstream 21710 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 104208 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 262994 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 300434 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017499 mRNA upstream 399303 7587951 ~ 7594082 (-) True AMCG00017499
TU113210 other downstream 59870 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 585622 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1751613 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1753639 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 1753639 5158384 ~ 5221021 (-) True G90501
TU113453 other upstream 642237 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 803489 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1307847 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1566640 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 3172652 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile