RNA id: TU113218


Basic Information

Item Value
RNA id TU113218
length 995
lncRNA type read_through
GC content 0.47
exon number 3
gene id G90746
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6733235 ~ 7188648 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tTTTATATATCACATTTTGACAATGAAGagaatattcatattcatgattcaaaatgtctttattaaagTCATTTATTGACTTGCACTAACAGCACATACAGAGGGAACAGGACAAACATACACTAATACATGTGATGGGGAATCAAAGTAGAGCATGTCTattgagattaaaaaacaaaacagccagtCTGAGCGTTGATTCGCACAAGGCATCGAAACAAAGCCTGTGGTTACTGTCTGATTGCACTGAAACTGATAAGACAATGTACTAAGCAATTCTACATTATGACGTGATGAAGCTGGGGGTGCCCTTGTCCTGGCTCATATTCAACACTCAGATGCCTTCAGCACCTTTGTAACGGTAGTCTGGTCTTTCTGGCTGGCATCGCACGTCACCGTCGGCTTTCTCTTCCACTGGTCCTCTGTTAGCGTCAGGGTGCTGCTCCAGCTGTACTTGCCATCACTCCCCAGGATCCCGGCACCGGTGGTGATACCACTGCTAACAGTGCTGCCATCCAATTTCCAATGCAGCTTCCAGTCAGACGGGAAACCTTTATTGGCCAGGCACATCAGTGTGGCAGTTTTCCTGGTTTTCAGCTCATCGCCAGATGGCGGCAAGACTGTAAGAACTGGAGAAGTATACTGCCGACATCCACTCTGGTCCCGCCACCGAAAGTGAACACCCAGCTACTACTGAGGTAGTGTTCACTCTGACAGTAGTAATCTCCTGTATCTTCAGGCTGGACTCCACTGATGGTCAGAGTGAAGTCAGTCCCAGATCCACTGCCACTGAATCGCGCTGGGATCCCAGACTGACGGGTAGAGGTATAATAGATCAGGAGTTTAGGAGCTTCTCCAGGTTTCTGTTGGTACCAGGCTAGGTGGTTGTTACCATTTACTGCACTGCTGACTTTACAGTTCACAGTGACGGTCTCTCCAGTGTGCACAGATTTCACTGATGGAGTCTGAGTCACTGTAACTTGTCCACTggattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113113 lncRNA downstream 39129 6693733 ~ 6694106 (-) True G90724
TU113107 lncRNA downstream 336344 6396628 ~ 6396891 (-) True G90718
TU113106 lncRNA downstream 337370 6395648 ~ 6395865 (-) True G90717
TU113105 lncRNA downstream 342006 6390885 ~ 6391229 (-) True G90716
TU113053 lncRNA downstream 952709 5779880 ~ 5780526 (-) True G90670
TU113271 lncRNA upstream 20796 7205620 ~ 7205861 (-) True G90783
TU113285 lncRNA upstream 37004 7221828 ~ 7226843 (-) True G90796
TU113297 lncRNA upstream 81243 7266067 ~ 7282477 (-) True G90805
TU113310 lncRNA upstream 138906 7323730 ~ 7324107 (-) True G90817
TU113391 lncRNA upstream 483356 7668180 ~ 7670591 (-) False AMCG00017497
AMCG00017482 mRNA downstream 11842 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 522233 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 924744 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017473 mRNA downstream 966092 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017469 mRNA downstream 1213080 5491436 ~ 5520155 (-) True AMCG00017469
AMCG00017487 mRNA upstream 25534 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 108032 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 266818 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 304258 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017499 mRNA upstream 403127 7587951 ~ 7594082 (-) True AMCG00017499
TU113104 other downstream 344197 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1510188 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1512214 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 1512214 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 2188475 4542775 ~ 4544760 (-) True G90400
TU113453 other upstream 646061 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 807313 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1311671 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1570464 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 3176476 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU322785 False 834 lncRNA 0.53 5 NW_024375613.1 528251 ~ 651704 (+)
tiger barb (Puntius tetrazona) TU250674 False 822 TUCP 0.49 4 NC_056723.1 13800810 ~ 13893911 (+)