RNA id: TU113220


Basic Information

Item Value
RNA id TU113220
length 433
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G90746
representative False

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 6733235 ~ 7188648 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCACAGGCTGTGTCCCATTTCACTGCCTTCACCCTCAGCACCTGCAGTAGGTCTCAGCTGCAGCAGTGCAGTCTCTGTGCAGTTCAGCTGAGGGAGGTTTTTGTACggctgtgtatcactgtgtgaACACATAGCCACTGTGGTAACTCTGACAGTAGTAGTCTCCTGCATCTTCAGGCTGGACTGCACTGATGGTCAGAGTGAAGTCAGTCCCAGATCCACTGCCTCTGAATCGCGCTGGGATCCCAGACTGACGGGTAGTGGCAGCATAGATCAGGAGTTTAGGAGCTTCTCCAGGTTTCTGTTGGTACCAGGCTAGGTGGTTGTTATtatacactgcactgctgaCTTTACAGTTCACAGTGACTGTCTCTCCTGGGTGAACAGATTTCACTGATGGAGTCTGAGTCAGAATGTACTGTCCATTGgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113113 lncRNA downstream 163905 6693733 ~ 6694106 (-) True G90724
TU113107 lncRNA downstream 461120 6396628 ~ 6396891 (-) True G90718
TU113106 lncRNA downstream 462146 6395648 ~ 6395865 (-) True G90717
TU113105 lncRNA downstream 466782 6390885 ~ 6391229 (-) True G90716
TU113053 lncRNA downstream 1077485 5779880 ~ 5780526 (-) True G90670
TU113201 lncRNA upstream 65832 6974660 ~ 7188648 (-) True G90746
TU113217 lncRNA upstream 121945 7030773 ~ 7184824 (-) False G90746
TU113209 lncRNA upstream 144386 7053214 ~ 7184824 (-) False G90746
TU113246 lncRNA upstream 157057 7065885 ~ 7124174 (-) True G90762
TU113271 lncRNA upstream 296792 7205620 ~ 7205861 (-) True G90783
AMCG00017481 mRNA downstream 84213 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017482 mRNA downstream 136618 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 647009 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 1049520 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017473 mRNA downstream 1090868 5764570 ~ 5767143 (-) True AMCG00017473
AMCG00017485 mRNA upstream 68109 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017487 mRNA upstream 301530 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 384028 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 542814 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 580254 7489082 ~ 7491787 (-) True AMCG00017492
TU113104 other downstream 468973 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1634964 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1636990 5158384 ~ 5221021 (-) False G90501
TU112835 other downstream 1636990 5158384 ~ 5221021 (-) True G90501
TU112697 other downstream 2313251 4542775 ~ 4544760 (-) True G90400
TU113233 other upstream 203608 7112436 ~ 7113181 (-) True G90749
TU113453 other upstream 922057 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 1083309 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1587667 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1846460 8755288 ~ 8755907 (-) True G91119

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU237646 True 727 lncRNA 0.40 3 NC_048566.1 97621775 ~ 97675000 (-)
rainbow trout (Oncorhynchus mykiss) TU1500878 False 2182 TUCP 0.45 6 NC_048579.1 61892671 ~ 61973695 (-)
striped catfish (Pangasianodon hypophthalmus) LOC117599556 True 542 V_segment 0.49 2 NC_047612.1 4449021 ~ 4449660 (-)
tiger barb (Puntius tetrazona) TU237646 True 940 lncRNA 0.40 2 NC_056722.1 4210072 ~ 4219093 (+)