RNA id: TU113246


Basic Information

Item Value
RNA id TU113246
length 891
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G90762
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7065885 ~ 7124174 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaaaaactaattcaactctagatcaacaaatcaaagacaaatcacttccgtgaccaaatcaaagaccatgggatcgcatatgatatcacacaaatcattaaacaagaaaggttataaacacattgactacaataccgcttagtaagacgaaggtgagtctctcattagtattgttagtcggacatcaaataactacgcaggttagtatttatgtcaggtaacttctcgttatatatatatcagtctcatttacgtttaggtgccgagaaagatcctatcattacttgttaccacaatttcccttaactgattattattcaatgattaaggataggcaaggccaccaataatctaatgtctattaacttgtgtcaatttcagactaaacagttaaacaggaatgagaagatatttctcggcgttgacagattttatttctaaaattatcaacaaaacagtttaatgcaacacacatttatatttaagcaaaactaaattatattacacattctagagttatgaatcacagattaacatttctaattgatttctcaaatgtcatgaatgatgaacaccaaactgttaaacttatgtgaacttcgtcgcagagaggcctctgtgtcttcgggctcagataacagcacacggcacgaggtccgtgtggtttggaacaaaggcagtccggttcggctttgtccaagaacttccactcagtcgatgcacctggaaattggggtttcgcgaaacagagtcttttccaaacagattttccactggtttgaaggctccaaggttgtgcacaaaatctttgCAAGCAGGGCTTCCACCGTAGtcacttgaagacaaagtctttgaggaaagcagggccctgtttgtttccaagggtcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113220 lncRNA downstream 157057 6858011 ~ 6908828 (-) False G90746
TU113243 lncRNA downstream 181917 6883642 ~ 6883968 (-) True G90759
TU113235 lncRNA downstream 188917 6760655 ~ 6876968 (-) True G90751
TU113113 lncRNA downstream 371779 6693733 ~ 6694106 (-) True G90724
TU113107 lncRNA downstream 668994 6396628 ~ 6396891 (-) True G90718
TU113271 lncRNA upstream 81446 7205620 ~ 7205861 (-) True G90783
TU113285 lncRNA upstream 97654 7221828 ~ 7226843 (-) True G90796
TU113297 lncRNA upstream 141893 7266067 ~ 7282477 (-) True G90805
TU113310 lncRNA upstream 199556 7323730 ~ 7324107 (-) True G90817
TU113391 lncRNA upstream 544006 7668180 ~ 7670591 (-) False AMCG00017497
AMCG00017485 mRNA downstream 84625 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017481 mRNA downstream 292087 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017482 mRNA downstream 344492 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 854883 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 1257394 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017487 mRNA upstream 86184 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 168682 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 327468 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 364908 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017499 mRNA upstream 463777 7587951 ~ 7594082 (-) True AMCG00017499
TU113210 other downstream 151095 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 676847 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1842838 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1844864 5158384 ~ 5221021 (-) False G90501
TU113453 other upstream 706711 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 867963 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1372321 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1631114 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 3237126 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile