RNA id: TU113271


Basic Information

Item Value
RNA id TU113271
length 242
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G90783
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7205620 ~ 7205861 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCCACATCTTTAATTTAACCTACAAGCATAAATTGTACACAATATTAAGATGCACATTTAGTTCAATCCTATATCGGCCTGGGAGTGTTTTTCGTTGGATGTGaactttttaaagttaaaagttCGCTTTGCACAGCTAAGCGCATCCTCTCATAAGACAGCTGGATATTGAATAGTGACTGAAGCTGAGACCAACAGACTCAAACTGTATTGTCTCCTTGGTAAGATGAGCTATTTcag

Function

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113201 lncRNA downstream 16972 6974660 ~ 7188648 (-) True G90746
TU113218 lncRNA downstream 20796 6733235 ~ 7184824 (-) False G90746
TU113222 lncRNA downstream 20796 6733235 ~ 7184824 (-) False G90746
TU113207 lncRNA downstream 20796 6802940 ~ 7184824 (-) False G90746
TU113208 lncRNA downstream 20796 6812121 ~ 7184824 (-) False G90746
TU113285 lncRNA upstream 15967 7221828 ~ 7226843 (-) True G90796
TU113297 lncRNA upstream 60206 7266067 ~ 7282477 (-) True G90805
TU113310 lncRNA upstream 117869 7323730 ~ 7324107 (-) True G90817
TU113391 lncRNA upstream 462319 7668180 ~ 7670591 (-) False AMCG00017497
TU113392 lncRNA upstream 487722 7693583 ~ 7694005 (-) True G90885
AMCG00017485 mRNA downstream 224360 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017481 mRNA downstream 431822 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017482 mRNA downstream 484227 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 994618 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017472 mRNA downstream 1397129 5790848 ~ 5808491 (-) True AMCG00017472
AMCG00017487 mRNA upstream 4497 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017489 mRNA upstream 86995 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 245781 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 283221 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017499 mRNA upstream 382090 7587951 ~ 7594082 (-) True AMCG00017499
TU113233 other downstream 92439 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 290830 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 816582 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1982573 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 1984599 5158384 ~ 5221021 (-) False G90501
TU113453 other upstream 625024 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 786276 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1290634 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1549427 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 3155439 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile