RNA id: TU113285


Basic Information

Item Value
RNA id TU113285
length 2852
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G90796
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7221828 ~ 7226843 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGTGCAGGGGAAAATGCAAACTATACGGTCCCTACACATTCTAGCATCAGAGTTTATAAAAGAGTTGATGATCTTCTGATTTGCTACTTGCTTCCTGGGGACAATGTCCATTGTGAAGATGGTTATGCGCTGAACAACACTTCCTTTGTGATCAAGGCCGTAAACAAGCTTCATAATGGCATATATGACACTGAACTTGATGACAGATCCATAACACTCCATCTTGAAGTTACTAATTGTTCAGTATCAACCAGAGAAAAGCCTGAAAACAAAGGTCATATAAATGAGAATGGAGTTGCTGCCCTGGGTCCTTCTGCTTTGCCTCGGCTCCTGGCTGCTGTGCTGGTACTGCGGACTGCTGGGTATCTGTAGACAGGGTTGGCACATTGTCTGGGGTGAAGTGTCACAGTGTCTGCGTGAAGAATCGTCACAAGAGAAGACTGCAGCCTCCTTTTTGCTTAATGCGTTTTTCTCATTACTAATCTCGACTTGGTCCCTCATTAGTTTTATAGTCAATGTGTGATGTGGGGTACAATGTTAAACAGCCTTAATGAAgtatattgttaaataattagGGTAACTAGCCTGTGAATAGTTCTGCCGAGGACAGTGGATATGGGAGTGAAGAAGGGGGTGGGCATGTGATGACACAGTGTATCTCTCACTCTTTCCCCAGCTGTGGCAGGTGAGGGATGCTGACAGACAGAGTCTTTACGATCTCTACATTCTCTGTTGTTacagacacagcacacagtTTTAATCAGAATAAGTCGTGGTTGTGGAAGCCACACTTAAAGCTCGCCGACTCTCCTGAGTctgaatttcattttcatcactCTGTAAATTGACACAATCACAGATCTAATTCTGCTGGGTTTTAGATCCTATTCTGACACAGATTAAAGAAGTGCCATGGGCATAGACTACATGGCCAAaggtatgtggacaccccttctaattagtgaaTTCGTCtctttcagccacacccattgctgacaggtgtattaaatcaagcacacagccgtgcaatctccatagacaaacattggcattAGAATGGGCCCCACtaaagagctcagtgactttcaattttgtgccctgctagagctgccccggtCAACTAAAGGTCTGtaattgtgaagtggaaacggCTGgtagcaacaacagctcagctgcAAAGTGGTAATCCACACAAGCTCGGAGAATGGGACCACCGAGTGCTGAAGCCTACAAATCATCTGTCCTCAGCTGTAACAATAATTTCTGGgctccaaactgcctctggaagcagtTTTGTTGAGATCGGTGTAGAAGAagttgactggcctgcacagagccctgacctcaaccccatcccacctttgggatgaactggaacgcCGACTGTGACCCAGGGCTggtcgcccaacatcagtgcccgacctcactaatgctcttgtggctgaatggaagcaaatccccgcagcaatgttccaacatctagtggaaaaccttcccagaagagtggaggctgttatagcagcaaagaggcgaccaactccatattaatgcccctGATTTTGGAATGAGGTGTTCgatgagcaggtgtccacacTTTTGGCCAAGTAGTGTGTAACTGATGAAACTTTGTATTGTATACataagcaaacacacacatatatatgcatctagaataaaatatacactggCTGTCACAATGACGGGATTAAATCGACAATATTACTCAAGTACAAAGTGCAAAAgatgtgtgtgttaaaaaaagggTGGCCCTTTTTAGCTCTCACAGCTGCACAATAGGGATTACATCACAGAAGTGTTATAGCAGTGTGACTGTTGTTCTTCATTCAGTCAGATTGTCAATTTTGTCCCATTTGGTTTCAAACCAGTATAtctttattatactttattgactttaaataattaattcatttataatgtttaagTAACAGAAAACTATACAAAAGTGATGGTAGTACACTGGGATTTGGGATTTTCCCGGTTAAACATCTCAACAGACTGCTTGGCtgcttcatcatcatcataataataataataataataataataataataataatataaggcGAGACATATCTGGGAGACCGTTAAACTACCACCTATCAACTATCTCTTGTTCATCAGGTCTACCCGGTgaattttttaattcaaattgtcTTTATCAACACTAAGTGCAATGACTCCTGGACTCTGGGCAGCATGGTTGTGACCTCAGCCTGCCACTGGCTAGCCCTTCTGTATCTATCTGCACTGCTTGCACGGGTGTAGATAAACATAAGATAATCTTTTGTGCAGTGTATGCATAAGAGGTGAGAACACTGTGGTGTTGCGCAGCACTATATTACACCGTTAGACCTTCCCTCTGAATCACACCCATCTCCAGCACTATGACCTCTGACTTTGAGGAGAAACAGGCTGCTGCAATATTGCCTACACATCAAAAAAGGGGCCTCAGTTTCTGAGCTTTAAACCACAAGAAGAAATGTTGCCTACACCCATGAGCTTAAAAGCAGGCCGAAGCCATTTTAGAGTACATCGGACTCTGAACCATTCTGGGTCTACGAGCTGGTCATCTGTACAGGCAGTCAGAGCCTGACTAGACTTGTCTATGTGTTATTTACAAGCAGTGTAGCTCTGTGGTATCCAACCATCTGATCTGTCTGCTTTGCTTgcttaaactaaaataaactaagaTTATCTTGATATAAAAAGAGGTCCACACCTGTTCTTGCCTCATCAATGTGGAAGCAAAGTGGCatcctttctctttttattatcatatagtgtgtatttttattttaacctgtAATAAAGTCTTCTCCGGCACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113271 lncRNA downstream 15967 7205620 ~ 7205861 (-) True G90783
TU113201 lncRNA downstream 33180 6974660 ~ 7188648 (-) True G90746
TU113196 lncRNA downstream 37004 6878864 ~ 7184824 (-) False G90746
TU113297 lncRNA upstream 39224 7266067 ~ 7282477 (-) True G90805
TU113310 lncRNA upstream 96887 7323730 ~ 7324107 (-) True G90817
TU113391 lncRNA upstream 441337 7668180 ~ 7670591 (-) False AMCG00017497
TU113392 lncRNA upstream 466740 7693583 ~ 7694005 (-) True G90885
TU113416 lncRNA upstream 546375 7773218 ~ 7784195 (-) True G90908
AMCG00017487 mRNA downstream 83 7210358 ~ 7221745 (-) True AMCG00017487
AMCG00017485 mRNA downstream 240568 6976937 ~ 6981260 (-) True AMCG00017485
AMCG00017481 mRNA downstream 448030 6772822 ~ 6773798 (-) True AMCG00017481
AMCG00017482 mRNA downstream 500435 6718436 ~ 6721393 (-) True AMCG00017482
AMCG00017476 mRNA downstream 1010826 6181726 ~ 6211002 (-) True AMCG00017476
AMCG00017489 mRNA upstream 66013 7292856 ~ 7299945 (-) True AMCG00017489
AMCG00017490 mRNA upstream 224799 7451642 ~ 7453573 (-) True AMCG00017490
AMCG00017492 mRNA upstream 262239 7489082 ~ 7491787 (-) True AMCG00017492
AMCG00017499 mRNA upstream 361108 7587951 ~ 7594082 (-) True AMCG00017499
AMCG00017500 mRNA upstream 398728 7625571 ~ 7639260 (-) True AMCG00017500
TU113233 other downstream 108647 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 307038 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 832790 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 1998781 5222473 ~ 5223047 (-) True G90502
TU112835 other downstream 2000807 5158384 ~ 5221021 (-) True G90501
TU113453 other upstream 604042 7830885 ~ 7832592 (-) True G90937
TU113456 other upstream 765294 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 1269652 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 1528445 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 3134457 10361300 ~ 10497104 (-) True AMCG00017556

Expression Profile