RNA id: TU113357


Basic Information

Item Value
RNA id TU113357
length 1660
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G90857
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7624692 ~ 7626452 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGATTCACTGATTTATTTCACTTGTCATGAAAGGTTTTGTATTGATGACCCAGAATAGGGGTACTGTCTTCCTACCCACACAGCAGGTTAcagaattattaaaatcaaaatgcacacacagagacacatacacaaaaaaaaaaatcatccgTAACTTCAAGCACTCCACAATACACGCCGGACAACACTAAAGGAAGCTGTCCAGGAATTTCAATGCTCAATTTACAGGATAAAACAATCTATTCAAACTCATTCCAGTCTCTGTGCAGATACGGGTTCCTGATTGTTATTCTGGCTGTGCTGTCCACAGGAGTCGTTTCTCTGCGAGTCGGTGTGGTTGCACCAGTGATTGTGAATGAATGAACTCCTTCTGCAGACATAGCAGGCCAGCAGTGTCCGACTGTGATAGGGACTCATGCATAGAGAGCTCAAACACAAGCATAGGGACTGCACAGAGCCAGGGAAGAGAGCCAAACACGAGAAAAGGGGAGTAAATACTCATATTGCATGTCAGTCTCAGATTGCATCTGTCTGGGGTAGCAGTACTTCACGCCTGTAGCACCTTTAAATTGGAATTGACAGGGTGAGAGAGTGCAGATTGAGTACGGTAGACCAATGCGAATATAGAGGGGGTTGCAGAAGCAGGGAGAAAGACAAAGGACACCGAAGAGGTAGGCTGAGAAAGGGCAGAAAGATGGAGCGAGGCAGGGAAAGGAGAGATCCAGAACTGGAAAAGCCAAGAGACAGGCTTGTGAAGGAGCAGGAGGTTATGGGAAGATGGGGACAGGACAGGAGAGGTAGCTCATAACAGGCTCTGTACAGGTGTCCGGTTAGGTTGTGAGAAGAAGGACTATGGTTGCATGGGTGCATTTCCAGTTCACTGTGCAGAGGTGCAGCTGTCCCCCTCTTTGCTGGACACTAGATCCTGGTCACTAGACTGGACAGAAGAGTTAGGGGGTACGGCATCTGTGTGGGGGACACCGTTTCGAGTCTCTGGCTCAGTCTCTTTTGGTGGGACAGTGTTGGAGTCAGTCCCTGTGTTCAGTCTGGTCTCTACAGTCTCCGTGCTGGAAACCGTGTGCGTGGACTGTGGGACAGTCTCCGCGGCCTCCGATCCCTCGGGCTGGGCCGCCCTGCGCTCCAGTGCCAGCTGCATGGCCCAGATACTGAGCGGGCGCATGTAGGCGAGCGAGCGGAAGATGCCCCTCTCGCAGTAGGCCTCGGGGGTTTGGAACGCCATGCCGAGTCGCTCCCACACGGTGCGGTAACACCCCTCCGCTGCCCGCATACCCTCCTCCACCATCCCCTGGCTCATGGATCATAGTGGCAGCCAGGCCGTACACCACTCCGACCCACACCTCGTCCGACTGAACACTGGAGCAGTCCGGCACACCCTCCGGCCGCATCCCATTCACAGCGCCCATCTTTCCCCCAGCAAACTGCATCACATTCAGATCAAACACTGTGCGGAGGGCCTGCCGCACCTTCTCTGTCGGGAATGCCTgggagagacaaaaaaaaaaaaaaaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcatcatcatcatcatcatcatcatcataacagcCACATGTTACTGAAATCTGAGCACAGAAccaagacagagggagagaaagtagGGTGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113150 lncRNA upstream 436049 7010723 ~ 7188643 (+) False AMCG00017486
TU113149 lncRNA upstream 436049 7185520 ~ 7188643 (+) True AMCG00017486
TU113192 lncRNA upstream 471948 7112416 ~ 7152744 (+) True G90743
TU113182 lncRNA upstream 613631 6974661 ~ 7011061 (+) True G90733
TU113178 lncRNA upstream 634549 6944472 ~ 6990143 (+) False AMCG00017486
TU113385 lncRNA downstream 45691 7672143 ~ 7672373 (+) True G90878
TU113386 lncRNA downstream 51447 7677899 ~ 7678465 (+) True G90879
TU113413 lncRNA downstream 164007 7790459 ~ 7790658 (+) True G90905
TU113414 lncRNA downstream 179926 7806378 ~ 7809418 (+) False AMCG00017508
TU113429 lncRNA downstream 224716 7851168 ~ 7851374 (+) True G90915
AMCG00017494 mRNA upstream 18493 7605288 ~ 7606199 (+) True AMCG00017494
AMCG00017491 mRNA upstream 149670 7459064 ~ 7475022 (+) True AMCG00017491
AMCG00017488 mRNA upstream 345200 7240443 ~ 7279492 (+) True AMCG00017488
AMCG00017486 mRNA upstream 436080 7180946 ~ 7188612 (+) False AMCG00017486
AMCG00017483 mRNA upstream 778586 6844975 ~ 6846106 (+) True AMCG00017483
AMCG00017496 mRNA downstream 15823 7642275 ~ 7647260 (+) True AMCG00017496
AMCG00017493 mRNA downstream 28931 7655383 ~ 7658125 (+) True AMCG00017493
AMCG00017495 mRNA downstream 37256 7663708 ~ 7667075 (+) True AMCG00017495
AMCG00017503 mRNA downstream 75662 7702114 ~ 7712194 (+) True AMCG00017503
AMCG00017508 mRNA downstream 179936 7806388 ~ 7813639 (+) True AMCG00017508
TU113164 other upstream 439902 6804744 ~ 7184790 (+) False AMCG00017486
TU113384 other downstream 41731 7668183 ~ 7671850 (+) True G90877
TU113388 other downstream 66133 7692585 ~ 7693347 (+) True G90881
TU113473 other downstream 505916 8132368 ~ 8132854 (+) True G90955
TU113646 other downstream 1061245 8687697 ~ 8689406 (+) False AMCG00017526
TU113671 other downstream 1125261 8751713 ~ 8753781 (+) False AMCG00017527

Expression Profile