RNA id: TU113384


Basic Information

Item Value
RNA id TU113384
length 3668
RNA type TUCP
GC content 0.53
exon number 1
gene id G90877
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7668183 ~ 7671850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtttatttgtttttggtttgcttttgaaatttgtttttaatcattcatacattttcaatcaatAAACTTTCACTTATTAAAGAAGCAGCTTTATAGTTTATGCATGCTGACCAGAAGTAATATGGAGAGGTTTATATACGATGATCTGAACGTTAAGCTGGATGCGTTTAGAGCACCTCATCTTTGCCGTACACTTTCGTTTGAAGAACGAATGGGATCTTACAGGCAGATCTTTGGAACGGCACATGAGAGAGAAGATAGAGCAGAGATCTCGAGCCTTAGACCTGGAGAGCCATAGTCCTGGAGGTTTAATGGGAACTAGAATCTGATTGGAGGCTTGGAAAACACAAGAACTTGCACTCATCAACTACAAGGAAAACCAGGAGACTGTGTGGCTCTCCAGGTATAGGCGTGGACACCACTGAACTAGATAATGGGAAGAGGTTGAAAGGAGAATGGCCTGCAAACAGTACTTTATCCTAAGTGGAGTGTAGAAGAGTGCAGGTGAAACCAGTCTGGCCCTTTCCTGCAATCAGTCTCACCTTAAGCTTGCACCGTGATGGAACTATTCACTATCTATTATGATCATGCACCACTCAGCTGAGCCAGAGGTCTTTAGTGGATGAATCTACGACTACATTGactaaattacacattttacaaagcCTGATTCCTATTGCAACGAGAGGTCGCCGAAGCTGGCTTTAGTAGGAAATACTCTATGTGCTGCATAATCAGAGCAAAGTGCAAGTAAGAGACTGTGGCATCTTCGAATGACAGCACTCCACACAAGATTTActatccatatatattttttttttatttattctttaaattaagattttatcTGACCCGATTTATTAAAGCTGTTCATGGTTTCCAATGATAAGTGCTTCATGTGAGGGTGAAGGAGGGCCCTGGGTACTCAGAGGCTAAGGGTCAGAATCATGGAACATTATCCCACCACAAGTTCACACCAGATATTTCCTGTCCAGAATGAAAAACAACGGGGCTGTGAAAAACCAGACATCTTCACAGAGGTGCATCTGAACTGAGGCTCCTCGGAATTCTACAAAAATCAGGAATGGCTTCAGAGTTTTCTTAAAGAAAGGGGTGTTGTAGTGGAAAATAAGTTGTCAATACTGACCCGATAACTAGACCATGGGCGGACACGAAGTCCCCAGACCAGCTCTCTCTCCCAGGACCCTCCAGTACCCCCGGGGAATAAATAAGCTAAAAATCAGGGAATTCGGGGGTTTCAAGCAAAAACTCTGTACAGCAGTCAGTGTAGAATACAAACTcttgtaagaaaaaatataccATTTAAATTCATTGCCTCTTGTAAAgtacatagaaaaaaaatgaatccccGCCCTACAGCAACCCCCCCATTGTCCCCCACAGCGTCATGTGCAGATTGAGAGCTGCGCAGTGCTGGGATTTCTCAGACAGCACGGCCTGCCTGGGGAGTGTTTGCACGGACAGTGTGGTGCGGAGAACAATGTGATCTgtacaaaacacagagacaacaAATCATGTTTCGCCCCCGTGCAATTTCTCTCCCGTCACACTGGCTGTTCACACTTCTAAACCGTAGTTTGTAATACTCATGCTGTGTGCAACAGGGTCACAGGGGTAAATCAGTAGATCTGAAACTAAGGAGGTACTCCACTCTGTATGTGCGACTCCAGGAGATAGAGATGGGAGGCAGGTTGAGGCAGATTGTGACTGGAACTCTGCGAGAGGGGCTGATGGGACGGTTAGGTCAACCTCTCCGTCCCTCTCACTCTCCTCCCATCCCACCAAACACTCGAGCTCCCCACCGCTAGCAAGTGTCGATACTGCAGAGTGCTGGGGAGGTGTGTGGAATGTTACCCTGGGCTCAGTCCGGGCAGgcgacgcacacgcacacgcacacgcacacgcggtccattaaaacacaaaccagcaCGCAATGCAATGCAACAAAGAGAAATGCAACCTCCCGAATGACCCCGAGTAGCTCCTCCTTCCCAACCACTCCTTTTCAGACGGCGACTGCCACCGCTTCACACCGACTGCACACCGCAGTGCCACTACCCTCCCCTTCAGGCTCGTTCAGTGCAACTCCAAGAAAcgcaaacaaaacaacctgaGAGCAAGCCACAGAGGAGAGAGTGGTTCCGGCAATCAGAAGGGTGTATAGGGCTAGAAAAGTAGGGCCCTCTTCACAGACTCTAGGTGTAATAACCCAGCAAACCCAAGAGCACCCCCACAGGCTGCTGGCCACTCACTTTCTCCCCATATTGGTCTATCATTCTGTTCACTATAGAAACTGCCCCTGCCATTGTTGCCCAGAgcctgggggaaaaaaaaaaaaaagagtggaGGAGGCAGCAAACTCCTCAACACCCCTGAGCAAACATCAGCAATAACAGATATAAttaacaatatgaaaaatatctATACAGAGACAGTGCTGACAGGAACTGGAGCCACATCGAAGGATGAGGACATCCTCCCTATGTCTGTGCCTCCGGGAGGGGCAGGCTGGGCTCGGCACTGTGCCCAGGTAGGCGTGGGGCGGCCGGGAGGGTCTTTGTGTTCCCACAGAGCAGGCTGCGCCGCGCCTCTCCATTCAGGTTCTTATAGGGGGGGGGGTTCCTGCGGGGTCGCAAGCAAGCTGTTGGGAAGCGGAGACCCGCCAGACAGCAGCCCGGACAGGAAATGACCTCGTCCTGCTCCAGGGTGGCTGTGCTGGATCCGTGCAGCGGGAACGAGGGACTCGCAGAGTTCCCGTGATAACCgttgcccccccaccccaagggGTGGCTGACCACCACGGCCGTGTTGTTGTTATCGAGCGGGGACAGCGGGGGCAGCAAGGGCGGGCCATTGGAAACTGGAGAGTTCCAGCCATTGGCCAGCACAGAGGGCGAGGGAGGGCTGAGGCAGGACTGGTTCGGTTGGGGTCCCTCCAGGAACACCGAGCCCTCCAAGGTGTCCGGGCTGCTGGAGCAGTCCATGGGCTCCCCCAGACAAAGAGTCTCCAGATCTCCCTCAGTCAGCATCTCCAGAGACACCAACTCCAGGTCCACGGGTGTCTCCGAGTCCAGCGTCGACCCCCTACTCTCCCCCACCTTCTCCATCCTCCCTGCAGGCTGCCTCATGACCGGCTCGCCCCACCGCTCAGGGTCAGGCATCTGCCCTCCGCCCAACCTGTACGCCACCACATCGATGCCTCTGTCCTGTGGCTCACTGACCCTCAGCTGCCCCTGCCTGTGCTGGGCCAGAGCAACCTGCTCCTCGGAGGGGGCCAAGGTGGGCCGGGTAGGGCGGGGCAGTTCAGGGGTGCAGGGCAGCGAGCGGCAGCGACGAGGGGTCCCTCTGGAATCCCGCCAGGGGTCAGGGGGTGTGGGGGAGGAGCCAGTGCAGGAGTCGGGTGGTTGGGGAAGGGCGAAGGTCAACGAAATGACAGACTTGCTGGGCGTGTCGAACAGCTTGATCTTGCCGCCGTTGAGGTCCTGCCGCTGGGAGAAGGGGTTGACCCGGGCAGGTGTGCCGGAGAGCAGGGGTGGTATCGCAGGCGGCAGCATGTCAGACTGGCTACGGGACAGCCCTCGGTCCCAGGGCAAGCACAGAGAGCGTCGCCGAACAGGGCTGGAGCCAGGGGCCAACAGGGGTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113357 lncRNA upstream 41731 7624692 ~ 7626452 (+) True G90857
TU113150 lncRNA upstream 479540 7010723 ~ 7188643 (+) False AMCG00017486
TU113149 lncRNA upstream 479540 7185520 ~ 7188643 (+) True AMCG00017486
TU113192 lncRNA upstream 515439 7112416 ~ 7152744 (+) True G90743
TU113182 lncRNA upstream 657122 6974661 ~ 7011061 (+) True G90733
TU113385 lncRNA downstream 293 7672143 ~ 7672373 (+) True G90878
TU113386 lncRNA downstream 6049 7677899 ~ 7678465 (+) True G90879
TU113413 lncRNA downstream 118609 7790459 ~ 7790658 (+) True G90905
TU113414 lncRNA downstream 134528 7806378 ~ 7809418 (+) False AMCG00017508
TU113429 lncRNA downstream 179318 7851168 ~ 7851374 (+) True G90915
AMCG00017495 mRNA upstream 1108 7663708 ~ 7667075 (+) True AMCG00017495
AMCG00017493 mRNA upstream 10058 7655383 ~ 7658125 (+) True AMCG00017493
AMCG00017496 mRNA upstream 20923 7642275 ~ 7647260 (+) True AMCG00017496
AMCG00017494 mRNA upstream 61984 7605288 ~ 7606199 (+) True AMCG00017494
AMCG00017491 mRNA upstream 193161 7459064 ~ 7475022 (+) True AMCG00017491
AMCG00017503 mRNA downstream 30264 7702114 ~ 7712194 (+) True AMCG00017503
AMCG00017508 mRNA downstream 134538 7806388 ~ 7813639 (+) True AMCG00017508
AMCG00017510 mRNA downstream 159148 7830998 ~ 7835213 (+) True AMCG00017510
AMCG00017509 mRNA downstream 320265 7992115 ~ 8023128 (+) True AMCG00017509
AMCG00017511 mRNA downstream 503880 8175730 ~ 8177002 (+) True AMCG00017511
TU113125 other upstream 483393 6729738 ~ 7184790 (+) False AMCG00017486
TU113143 other upstream 483393 6729738 ~ 7184790 (+) False AMCG00017486
TU113159 other upstream 483393 6729738 ~ 7184790 (+) False AMCG00017486
TU113167 other upstream 483393 6729738 ~ 7184790 (+) False AMCG00017486
TU113139 other upstream 483393 6804744 ~ 7184790 (+) False AMCG00017486
TU113388 other downstream 20735 7692585 ~ 7693347 (+) True G90881
TU113473 other downstream 460518 8132368 ~ 8132854 (+) True G90955
TU113646 other downstream 1015847 8687697 ~ 8689406 (+) False AMCG00017526
TU113671 other downstream 1079863 8751713 ~ 8753781 (+) False AMCG00017527
TU113887 other downstream 1847923 9519773 ~ 9583280 (+) True G91281

Expression Profile