RNA id: TU113386



Basic Information


Item Value
RNA id TU113386
length 567
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G90879
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7677899 ~ 7678465 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATAGGTGACCAACTGACCTGTACACAGGGATTTTCTCTGCCAGCCCGAAGTCTCCCACCACAGCAGTGAAGTGGCCGCTGTCACAGCGAACCAGACAgttctacagagagagagagcgagagagagagagatggagtgggggagggggatcTCGAATTTGTGGAGAATGTGCGTCCATCTTTAACCTTTGGATTTGAAAATGGGGTAAAATGTACACTCCCGCAGGACAATTCACACTGTGAGGATCAGCGTGATTTAGAAGCTAGATCAGACGGCGCTTTGATGCAAGGACCCTGTGCCACTGTGTGCATGCACATATTATAGGATACTTCCACTATTTCTACACCAAGTAGATCACCAAAATGTTAAATGGACACAAATTCATAAAGAGAAGGATAATTTTCAGAGATGTGTGCAGTACCTTGGAGGTGAGGTCCCTGTGGAAGATGCCCTTGCCGTGTAGGTACTGCAGCCCCCGGGCGATGTCCAGCGACAGGCCCTCCCTCACGGCCCAGGACAGGTACACATCACTGTCCAGCAGCTGCTCCAGATTGCCCCCATTAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113385 lncRNA upstream 5526 7672143 ~ 7672373 (+) True G90878
TU113357 lncRNA upstream 51447 7624692 ~ 7626452 (+) True G90857
TU113150 lncRNA upstream 489256 7010723 ~ 7188643 (+) False AMCG00017486
TU113149 lncRNA upstream 489256 7185520 ~ 7188643 (+) True AMCG00017486
TU113192 lncRNA upstream 525155 7112416 ~ 7152744 (+) True G90743
TU113413 lncRNA downstream 111994 7790459 ~ 7790658 (+) True G90905
TU113414 lncRNA downstream 127913 7806378 ~ 7809418 (+) False AMCG00017508
TU113429 lncRNA downstream 172703 7851168 ~ 7851374 (+) True G90915
TU113431 lncRNA downstream 243727 7922192 ~ 7922640 (+) True G90917
TU113433 lncRNA downstream 284578 7963043 ~ 7963276 (+) True G90919
AMCG00017495 mRNA upstream 10824 7663708 ~ 7667075 (+) True AMCG00017495
AMCG00017493 mRNA upstream 19774 7655383 ~ 7658125 (+) True AMCG00017493
AMCG00017496 mRNA upstream 30639 7642275 ~ 7647260 (+) True AMCG00017496
AMCG00017494 mRNA upstream 71700 7605288 ~ 7606199 (+) True AMCG00017494
AMCG00017491 mRNA upstream 202877 7459064 ~ 7475022 (+) True AMCG00017491
AMCG00017503 mRNA downstream 23649 7702114 ~ 7712194 (+) True AMCG00017503
AMCG00017508 mRNA downstream 127923 7806388 ~ 7813639 (+) True AMCG00017508
AMCG00017510 mRNA downstream 152533 7830998 ~ 7835213 (+) True AMCG00017510
AMCG00017509 mRNA downstream 313650 7992115 ~ 8023128 (+) True AMCG00017509
AMCG00017511 mRNA downstream 497265 8175730 ~ 8177002 (+) True AMCG00017511
TU113384 other upstream 6049 7668183 ~ 7671850 (+) True G90877
TU113173 other upstream 493109 6804744 ~ 7184790 (+) False AMCG00017486
TU113388 other downstream 14120 7692585 ~ 7693347 (+) True G90881
TU113473 other downstream 453903 8132368 ~ 8132854 (+) True G90955
TU113646 other downstream 1009232 8687697 ~ 8689406 (+) False AMCG00017526
TU113671 other downstream 1073248 8751713 ~ 8753781 (+) False AMCG00017527
TU113887 other downstream 1841308 9519773 ~ 9583280 (+) True G91281

Expression Profile