RNA id: TU113453


Basic Information

Item Value
RNA id TU113453
length 1395
RNA type TUCP
GC content 0.45
exon number 2
gene id G90937
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7830885 ~ 7832592 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCAACTTCATTgcctttaaatataatatacagaaaatagcACAAAATGAGCTTAATTCCTTTGACTAGTATTAGCATGCCTGGTAAACCCATCCCAGTTCAAATTGTCACAATAATATCCAATGTAATCCAAatggatgaagaaaaaaaaaaaaaaaaaaaaaagcaacctTGCAAGAAGAGGATTGAAGCGACAGAAGGGGTATCGTGTGCTTCAGACTCAGACATGCATTACACAGGATGGGAAATTAACTGGCTAGACAGGCAGACTCTCTCTTTAACCAAGTTAGGGGGGAGAAGAGGGCGAAAAAAGTGGTTTGGATCACTGCCCAGAGCAGGAAATGGAGGTCTGAGGCTGGCTTCTCAATATGTAACTATCTTTGTACAAAGAGGAGGCAGTGATTTTGTAAAGCAAAGATTTAAAAGTAGAGACGGGAGAAACTGCAATGTCCATTTGAATTAAGATCATGGCATTGCATTAACTCAAGAAATTAAAATCCTGCATCTTTGAAAACTACGATTTTCTTGCAAAATCTTTAGATCATTGGGATTTAACAGAAAATGGACCTTATTTGAAGCGCTATCTACTCTCGCTAGTTTGTGCACAATGGTCAGGCTCAGTATGTGCCCAGCACTGCCTACAGGCCAATTACCCcaagtgttaaaatacaacagCCGTTCACAAAAGGGATGGTATGTGGCTATTCAAGCAGCTGGCATGACCAGTCACTTTCCAAGTCAGCAGTATTTACACTGATCTGCTTTAGTGGGTGGATATTTCTTGGTCATCTGAGAGTAAAAGCACCACaagagggggaaataaaaccCACCTGAACACCTGGTGTATCCTGGACCTGAATGGCAACTTGTTCTCCATCGACTTGTACTTCTCTGGAGTATAAAGTACCTGTAATTGAATAAAACGCATACATTAAAAACCTATAGATTTAACAGAAAGCGTATGTGAAGTTATTTTGCTTAACTGAAACCTGGAATCAGAAATATGCTCACCAGAGTTTCTCTCGTAGTCTCCAATAAACCGGCGGGTTAGAAATCTCACCACCAGAGCTGTTTTCCGACTCCGCTCCCACCGATGACGGCGATCTTGATCACCCTGCCGGACGGGCACTCCGACGTGGGGCACTCGGAGATGGTGGACATGTTCTGGATCAGACGCATCTTCCTCGATGTATACAGCCTTTCCAACTCGGAGAAGCGTTGTTCACAGGAGTAGCAGAAAGCCGACAGCGACAAAAGTCCCGTACGTAACAAAAGCCTGTGGAGTCGGATCTCGGACGCGCACTGCTGGGCTCAGGGCTGGATAATCCGGTTGCGGGGCAGAGAGCGGCGCTGCGGGTCTGGCTGGTGCCTACAGGGATCTCTGCCACTTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113454 lncRNA downstream 276 7828498 ~ 7830609 (-) True G90938
TU113416 lncRNA downstream 46690 7773218 ~ 7784195 (-) True G90908
TU113392 lncRNA downstream 136880 7693583 ~ 7694005 (-) True G90885
TU113391 lncRNA downstream 160294 7668180 ~ 7670591 (-) False AMCG00017497
TU113310 lncRNA downstream 506778 7323730 ~ 7324107 (-) True G90817
TU113465 lncRNA upstream 181803 8014395 ~ 8023105 (-) True G90948
TU113474 lncRNA upstream 299803 8132395 ~ 8132854 (-) True G90956
TU113484 lncRNA upstream 328943 8161535 ~ 8162113 (-) True G90964
TU113485 lncRNA upstream 332062 8164654 ~ 8164905 (-) True G90965
TU113512 lncRNA upstream 396723 8229315 ~ 8229561 (-) True G90992
AMCG00017505 mRNA downstream 37286 7781052 ~ 7793599 (-) True AMCG00017505
AMCG00017504 mRNA downstream 54530 7755657 ~ 7776355 (-) True AMCG00017504
AMCG00017497 mRNA downstream 151535 7668024 ~ 7679350 (-) True AMCG00017497
AMCG00017502 mRNA downstream 169052 7660846 ~ 7661833 (-) True AMCG00017502
AMCG00017501 mRNA downstream 170223 7658067 ~ 7660662 (-) True AMCG00017501
AMCG00017507 mRNA upstream 11054 7843646 ~ 7851221 (-) True AMCG00017507
AMCG00017506 mRNA upstream 157201 7989793 ~ 7991440 (-) True AMCG00017506
AMCG00017513 mRNA upstream 191064 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017512 mRNA upstream 309848 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017516 mRNA upstream 496555 8329147 ~ 8349988 (-) True AMCG00017516
TU113233 other downstream 717704 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 916095 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1441847 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 2607838 5222473 ~ 5223047 (-) True G90502
TU112828 other downstream 2609864 5158384 ~ 5221021 (-) False G90501
TU113456 other upstream 159545 7992137 ~ 7996595 (-) True G90939
TU113572 other upstream 663903 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 922696 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 2528708 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 6600566 14433158 ~ 14479787 (-) True AMCG00017631

Expression Profile