RNA id: TU113456


Basic Information

Item Value
RNA id TU113456
length 550
RNA type TUCP
GC content 0.44
exon number 5
gene id G90939
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 7992137 ~ 7996595 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCACTGGAGTAGCTCCATAAGCAGCATACTGAGGTGCCCCAGTCTTAATATCCCCAATGGTGACGCGgacatcatcgtcatcatcatcactgtCACTATCACTATCTTCATTGTCTTCTGTCGTGTCCTGCTTGGCTACACCATTCCCAGTGGCTTCCTCCTCAACTGTGGGTGGAGGAAACGCACTGACCGCGGCAGGTGCCTTCACTTCTTCCTcctcttgtttattttcattttcatCTCCGTACAACcattcctcctcctcgtctCCGGCACTAGCATCAGTGGCCGTCGTTTTATCAGCCTCTTCAGTAGacatcttttcttcttctttctttcaaacccgaaaggtgttttttaaaatatacaattctcACAGATTAGTTTATGTTTCCCAGTTGCAGTAAGTTATTTTGCACACGCTTTAAAGCTTCAATGAACAATAATACATCTCATAATAGTTTAACCCAtcaggaaatgtttaaaatgtaatatagtcCAACACGTTTCTACAGAGACGGGCCTTTCACCCTTCACCCGGAAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113454 lncRNA downstream 161528 7828498 ~ 7830609 (-) True G90938
TU113416 lncRNA downstream 207942 7773218 ~ 7784195 (-) True G90908
TU113392 lncRNA downstream 298132 7693583 ~ 7694005 (-) True G90885
TU113391 lncRNA downstream 321546 7668180 ~ 7670591 (-) False AMCG00017497
TU113310 lncRNA downstream 668030 7323730 ~ 7324107 (-) True G90817
TU113465 lncRNA upstream 17800 8014395 ~ 8023105 (-) True G90948
TU113474 lncRNA upstream 135800 8132395 ~ 8132854 (-) True G90956
TU113484 lncRNA upstream 164940 8161535 ~ 8162113 (-) True G90964
TU113485 lncRNA upstream 168059 8164654 ~ 8164905 (-) True G90965
TU113512 lncRNA upstream 232720 8229315 ~ 8229561 (-) True G90992
AMCG00017506 mRNA downstream 697 7989793 ~ 7991440 (-) True AMCG00017506
AMCG00017507 mRNA downstream 140916 7843646 ~ 7851221 (-) True AMCG00017507
AMCG00017505 mRNA downstream 198538 7781052 ~ 7793599 (-) True AMCG00017505
AMCG00017504 mRNA downstream 215782 7755657 ~ 7776355 (-) True AMCG00017504
AMCG00017497 mRNA downstream 312787 7668024 ~ 7679350 (-) True AMCG00017497
AMCG00017513 mRNA upstream 27061 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017512 mRNA upstream 145845 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017516 mRNA upstream 332552 8329147 ~ 8349988 (-) True AMCG00017516
AMCG00017519 mRNA upstream 390467 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017520 mRNA upstream 476895 8473490 ~ 8514803 (-) False AMCG00017520
TU113453 other downstream 159545 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 878956 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1077347 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1603099 6387252 ~ 6389038 (-) True G90715
TU112836 other downstream 2769090 5222473 ~ 5223047 (-) True G90502
TU113572 other upstream 499900 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 758693 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 2364705 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 6436563 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7870352 15866947 ~ 15867647 (-) True G92124

Expression Profile