RNA id: TU113473



Basic Information


Item Value
RNA id TU113473
length 487
RNA type TUCP
GC content 0.50
exon number 1
gene id G90955
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8132368 ~ 8132854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ccaatcagccataacattatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaacgggcaagcgtaaggatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggctcactgatgcacgtggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagtgaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113438 lncRNA upstream 142408 7989696 ~ 7989960 (+) True G90924
TU113436 lncRNA upstream 164040 7968120 ~ 7968328 (+) True G90922
TU113435 lncRNA upstream 165760 7966320 ~ 7966608 (+) True G90921
TU113433 lncRNA upstream 169092 7963043 ~ 7963276 (+) True G90919
TU113431 lncRNA upstream 209728 7922192 ~ 7922640 (+) True G90917
TU113511 lncRNA downstream 96461 8229315 ~ 8229576 (+) True G90991
TU113524 lncRNA downstream 153438 8286292 ~ 8286728 (+) True G91004
TU113664 lncRNA downstream 599514 8732368 ~ 8732632 (+) True G91104
TU113695 lncRNA downstream 651013 8783867 ~ 8784089 (+) True G91128
TU113705 lncRNA downstream 686859 8819713 ~ 8824837 (+) True G91135
AMCG00017509 mRNA upstream 109240 7992115 ~ 8023128 (+) True AMCG00017509
AMCG00017510 mRNA upstream 297155 7830998 ~ 7835213 (+) True AMCG00017510
AMCG00017508 mRNA upstream 318729 7806388 ~ 7813639 (+) True AMCG00017508
AMCG00017503 mRNA upstream 420174 7702114 ~ 7712194 (+) True AMCG00017503
AMCG00017495 mRNA upstream 465293 7663708 ~ 7667075 (+) True AMCG00017495
AMCG00017511 mRNA downstream 42876 8175730 ~ 8177002 (+) True AMCG00017511
AMCG00017514 mRNA downstream 58933 8191787 ~ 8212616 (+) True AMCG00017514
AMCG00017515 mRNA downstream 115105 8247959 ~ 8282506 (+) True AMCG00017515
AMCG00017518 mRNA downstream 227326 8360180 ~ 8376658 (+) True AMCG00017518
AMCG00017517 mRNA downstream 243970 8376824 ~ 8381670 (+) True AMCG00017517
TU113388 other upstream 439021 7692585 ~ 7693347 (+) True G90881
TU113384 other upstream 460518 7668183 ~ 7671850 (+) True G90877
TU113173 other upstream 947578 6804744 ~ 7184790 (+) False AMCG00017486
TU113646 other downstream 554843 8687697 ~ 8689406 (+) False AMCG00017526
TU113671 other downstream 618859 8751713 ~ 8753781 (+) False AMCG00017527
TU113887 other downstream 1386919 9519773 ~ 9583280 (+) True G91281
TU114078 other downstream 3746760 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 5904022 14036876 ~ 14039063 (+) False AMCG00017620

Expression Profile