RNA id: TU113539


Basic Information

Item Value
RNA id TU113539
length 1654
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G91016
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8289765 ~ 8381670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcaaacaaacactaagATGTAATCAAATTGGATCTCTGGTCTCCTGAGACTTTAAAACATGTGCTTTGtatattatgaaaatgtttatgaTGCAAAAATAATCACTTCAACTCAAATATGTGTCATCAAACTACTGAACGGTCATCCTTGGTTTGTTGCCTTGTAGCAAACGATTCACAAACGCAGtgaatatgtttaattattccGAGTTTGGCTCTTGTGTGTCTATTCCTACTGAATTGGGCTTACATTTGCATCGAAACCCTATATTGTAGTCTTGACTCATTTCCCCCCCTCTTCGTCATTGCAGTAATCAGGAAGAATCCAATGCAGCATGGATTTAAAATGGTGGCTAATATCACACCGTGGAAGAgattttattggtttaatttggaacattatttatatgaatCAGGGTTTACAATCATCTATTCTTCTGCATCACAACGATGTGGCTCAATATTTCCTTTGTAGTCGGTCAAGTTGCTTTGTGTCAAATATTGACAATGTAGTTACCTTGTAAGTTTTCAACCCGGCAAATGTAAAATTTCCCTGACATGTACAGtacctgatttaaaaaaaaaaaaaaaaactagcaaaaatattttaaatcttcacactaatttcattaaataaatacaaaactgccACTGAGTCCAGAAGAAATATCTTCAAACTGTTAAGATGGCCCTGGCCTTGTTTCTTATTACAATGTAGTCAATAAGTAGCAGTAAACATTTCCTATATTTGAAGACTTCTTCtaccaaaataaagaaattgctTGAAGAGCACACGCAGTGAATGGGTCGCAAACTCACAAAAGAGCAGGACTGGAGCGGAACCATACATGTACGGCTTCCATCACACAGATGaataattgtacatatatacagaaaatactCTGGATGAATCTTCACACAGCACAGGAATACAAATCGGTCAAAATCCAGCATCTGGCTTGATGAAGAGAGCCGAGAGGGCAAATGCCAAGAACACAATCCCACCGATTATCGTAaGTTCGGACAGATATTTTCTGAGCAATCATCCGTCCTCCAATCACTGCCAGTCCTGTGCACAGGCAGTGCCCCAGCGTTCCGCCAACAGCTACCCCGAAAGGATCCTGAAGAGATGCAATATAAGAACAGTCAGAGCTGAAAGAACTCACTCCGACAAAAGTGTTATCTGGTGATGCCATTGGCtcacaaaatattgtaattaaatgacaattacatatatacacacacattcattgaAGATTTGGGGACACTGCTTCAGTTGAGTCATTGGGGTGTGTACAATTGTGTGAAGAAACAACTCCCAAAGGTTCattcaaagaataaaaaataaaaaaacaagagcagTGGCCCAGCACATTAGGAACGCATGCAGCCCGAGTCGGGTTTTAAGCCTCCCATTCCACATCTGTTATAGAAGGAGCTTTTACGGGTTCGGCACAGCACTGTCATGGAAGCGCAGGCGGCTTCTCTCACAGACCTCTCGAGCTGCCAGCACAATGGTGGTCAACTGGGAGCGGTCACCCCATTCTGCCAGGAACGTGAGGGTGAAGGCCTGGATGAAGATCGGGGAGATGACACTCTGCCACTTCTTCTGGGGCATGCTGGTTCCAGAGCCGGCTTCCACgccttcatccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113525 lncRNA downstream 2648 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 60204 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 124860 8164654 ~ 8164905 (-) True G90965
TU113484 lncRNA downstream 127652 8161535 ~ 8162113 (-) True G90964
TU113474 lncRNA downstream 156911 8132395 ~ 8132854 (-) True G90956
TU113611 lncRNA upstream 221951 8603621 ~ 8605626 (-) True G91064
TU113678 lncRNA upstream 351090 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 1213260 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 1250975 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 1280894 9662564 ~ 9662788 (-) True G91298
AMCG00017512 mRNA downstream 128321 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017513 mRNA downstream 247311 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017506 mRNA downstream 298325 7989793 ~ 7991440 (-) True AMCG00017506
AMCG00017507 mRNA downstream 438544 7843646 ~ 7851221 (-) True AMCG00017507
AMCG00017505 mRNA downstream 496166 7781052 ~ 7793599 (-) True AMCG00017505
AMCG00017519 mRNA upstream 5392 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017520 mRNA upstream 91820 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017524 mRNA upstream 225389 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017529 mRNA upstream 281980 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017530 mRNA upstream 298143 8679813 ~ 8694359 (-) True AMCG00017530
TU113456 other downstream 293170 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 457173 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1176584 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1374975 6888722 ~ 6914790 (-) False G90746
TU113104 other downstream 1900727 6387252 ~ 6389038 (-) True G90715
TU113572 other upstream 114825 8496495 ~ 8514955 (-) True AMCG00017520
TU113686 other upstream 373618 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1979630 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 6051488 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7485277 15866947 ~ 15867647 (-) True G92124

Expression Profile