RNA id: TU113611



Basic Information


Item Value
RNA id TU113611
length 2006
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G91064
representative True

Chromosome Information


Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8603621 ~ 8605626 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tgaaattgtattgtatttaatctttCTACATAATGCACAACATCTTCACTTAAAAGAATTCCATAGGGAGTTAGTCTaagtggaacaaaaaaaaagtgcagttattaaaaacattggTACGGATAACATTTGATTACACTACACTATTGCACAgttataaagttaaaacaaacaaacaattgcaCTTTgggataatttaaaaataaaatcatactgtttggtaacactttacaataagtgtcCGTAATTCCAATGTTATAATACATGATGTAGTATGTGGTTTCcaaacaaattcatattcaaTGCCTATGAATTAAGCATGAATTCAGGACTTATTCCACATTTATCCACAAATAGccacttattttaaagtgtcacCAACTACTATAATGTACCATTAAATTACTTCTATACATACGTTATATAAGTTGATACAttaagaagcaaaataaatcagttatgGTCTTCAGTTTGCAAACATGAGCAGTCCACGAAGGCTAACACAAAAATAGACGTTTACAGCAGGTAAACAGTAATTGGAATTGTTTTTAGAGATTATAATTTGAAAGATGCTTATGAAATACTGTGCaagaataatgcatttataagtAGATCATAAACCACAGAACAGTAATacttttgtgtttcagtgcaaAATTTGTAGTGCTAAATACACGTGAAGTTTCAAACAAATTGTTTTCATCATGGTAAACTCAACAATGGCTTATATAACAGCAGTCACAGGATAACACTATTAGCATATAAAccaattgtgtttatttatttctcatgaactaaatgtaaataactaaaaatataaattaaaaactgtgtCCTCATATATGCCTATATACAATAGGTTCAGAgaccaaaacataaataaataaaagcttgaaaatctaatttaaaaaacgtagcttggaaataatttaaaaagcatcgTTTGTTGATAAACAGGAACCACTGCATTTTACATGTACATGCTTATAGTGGATTTAATCAGTAGATTTTAAATGGTGGAATTGATTGTGTGTTAATTATCACTTTCCATGCTAGCCCTTAAAACATTGCTGCTCTCTCAATAAGGGTATCATTGTGAAattagcaaacaaaaactgagaCCCAACAAGAAATACTGAAAGCCAAAGATATACCCATCGTTTTTGTAGTGATagaatttgttcattttttcagACAGGCATCTCAGACATGCTTCAATGATTCACAGACGTGTGTTAAAGTACATCAAACGATATTCATTTGGCTCCGTTGGTGTTATTTGGCTGTTAAATGACAGCTGATACCAATATATATGTAAGTTTATGACCTCATACCCCAAGAGGCATCTTGTAGTATTAGACTTGATGTAAACAGGTGGTCTGGTATGAGttgcacattttctgtgttaGGATAAGGAAGCCTAGGGGCTATACAGTGGAATTTGAAGTCCTTGTGATCAGTGGTGAGTAAGGATgtgttaaacaataaaaaacatagaAACTTAGTAAACAAGCAGTAGTGACACGTGGTGATAGTAGGACTGGGTTACTTGATAATCTGAGGGCAATCGCTCCAGGCCTTGGCTTTCCTCTTGGCCAGGGCCAGCCAGGCAGGTTCTGTCGAGACTTGCGGTGAATCTGAAGTGGGAAACCTTTTCGCCACGTCCTTAACTGCTGGAGCTGGAGACGTCGGGTCAGAAATCTCAACTGCAGCAGAAGGAAACAGAGTTAGCATTATGGGCAGAACGTGACATTTTAAGGTTGTGTTCAGAGCAAATCAAGATCTAATTTTAATCTCAAGATTTGTTTGCATTCTCTTTTCAAATATGTGCTTCTGAAAGCAAGTGAAAGAAGCTGAGCATCAGAAAATGAACATGCAGTTTCATAGTTACTGTCATGTTTGGTAAGCtgcagcaaacagaaaaagataGAAGGCAGAAGCAGGCAACGTCTAGCAAAcctaaaactacatttaaaatgcctAGTTTGGGATTTGCAGTAGCTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU113539 lncRNA downstream 221951 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 316504 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 374060 8229315 ~ 8229561 (-) True G90992
TU113485 lncRNA downstream 438716 8164654 ~ 8164905 (-) True G90965
TU113484 lncRNA downstream 441508 8161535 ~ 8162113 (-) True G90964
TU113678 lncRNA upstream 127134 8732760 ~ 8735232 (-) False AMCG00017531
TU113900 lncRNA upstream 989304 9594930 ~ 9595162 (-) True G91294
TU113903 lncRNA upstream 1027019 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 1056938 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 1069920 9675546 ~ 9675779 (-) True G91300
AMCG00017520 mRNA downstream 88818 8473490 ~ 8514803 (-) False AMCG00017520
AMCG00017519 mRNA downstream 187142 8387062 ~ 8416479 (-) True AMCG00017519
AMCG00017516 mRNA downstream 253633 8329147 ~ 8349988 (-) True AMCG00017516
AMCG00017512 mRNA downstream 442177 8142440 ~ 8161444 (-) True AMCG00017512
AMCG00017513 mRNA downstream 561167 8023656 ~ 8042454 (-) True AMCG00017513
AMCG00017524 mRNA upstream 1433 8607059 ~ 8627186 (-) True AMCG00017524
AMCG00017529 mRNA upstream 58024 8663650 ~ 8677813 (-) True AMCG00017529
AMCG00017530 mRNA upstream 74187 8679813 ~ 8694359 (-) True AMCG00017530
AMCG00017528 mRNA upstream 96252 8701878 ~ 8730713 (-) True AMCG00017528
AMCG00017531 mRNA upstream 127789 8733415 ~ 8748743 (-) True AMCG00017531
TU113572 other downstream 88666 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 607026 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 771029 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 1490440 7112436 ~ 7113181 (-) True G90749
TU113210 other downstream 1688831 6888722 ~ 6914790 (-) False G90746
TU113686 other upstream 149662 8755288 ~ 8755907 (-) True G91119
TU113928 other upstream 1755674 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 5827532 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 7261321 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 7424776 16030402 ~ 16030905 (-) True G92129

Expression Profile