RNA id: TU113705


Basic Information

Item Value
RNA id TU113705
length 4361
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G91135
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 8819713 ~ 8824837 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTAAAAACTGATTGAATACAGGGAAAAGAGGCCATGTTTTTCCGAACAGAAGACCCAACATACATTTGGCCGTGTTAATGTCTAAGCTCCTTTGGTCCTTCTCCTGTTAAGGAAAAGGAGAACTGGTTAAGGTTAAACATGGTATACATTTCAAAGTACACTAAGCTTGGGCGATAAAACATGTGTGTTACTTAATTTAGCATAAATGGCTGTGATTGGGTTATATTGCATGCTACATTAGTATAAATCTATTCACAAGATATCACCCTTGAAAATCTCTGTCTACAGAGACAAGCGTGTGCCTCTCAGCTTTGACTAAGATACTGCTAGCATCCAAATGTCAGCACTATTGCATAGACATTAACATCTGTCTTTCTTATAGATTAATTCAACAGACTGCAAGGTTGCCGTGTGTGAACTCACAGCGTATTGCTTTCCATTTAGTGAAGTCACTGTGTGTAAGCAGTCTGCTCTGACATTAAATCCTCTGTATTACATGACTTTTAATATGgatgaatattaaatatgttcacTCTAGGGAAAACTTTATCCAACCCAGACTTGGACTCTTATTCTTAAAGATGTATTGTTACAAGAGCCTTGACTGTGAGTAACCATGCTCTAACTTAAACATCAGCCCAACGTCTCATTAAAGTAGCATGCATTTTCTGTTGGGTCACCGTTCATGTGGTCAACTTGCTTGTTTAGGAAGGCAGATCTGAAAGTTACTGGCACTGCTGCTACTTACCCGtgcaaaatcaaatgcatatcTGTAAATAAGCTTAAAATTTGTCGACTCGTTCAGAACCGATCTCAAATAGTCTAAAGAATTTCTTAACTTCTCTGTTGTGTCACACCTACaaatttaaagaagaaaaagaattAGGGTCGATTTAGACTTCCAGTCTAATGGCCTTCACTTTGCcgtacaacaaaaaacaacacaaaaatgccGAGGATAGCATATAGTCATATAGTCAAACTTGGTCCCAACAGCTTAAAGGTATGGAAAAAAACTAAGGTTTTAGATTCATCACCCAGAGCTGTGCCAGGGCCTCTAGTTTGGAAACGCTTTCTCTGAACTAGTGTTGGAGTTGGTAAACAAggaagttttcattttcactggaCAGGTAAGCATTTTGATATTAAGCACCTCTCACTACCAATCAAGTGGCCTTAGAATAAAACTATATCAACCCTTTAAACTCAGTATGCAAAGCCTCATTCATCAAACAAATATGAATTGTGTCGATATTCCATGatgtacaaatattataatgaaaaaagtaatgtaCTTAAGAATCCAACTGGGATCAGTTTCTCAGGTAGCTGCTTCTCATCTGAAGATAATATCTTCTGCACTGTCAGATGCTTGAAATAAAATCTCTTCTACTTGTTGAAAATATTGCTTACAAGGTTATAGCTTCCGTGTTTGAAGGGCTAACGCAACACAGCTAAGCTCAATAAAATCACACTAAGCCTCTCGATTTAGTATTCAAACTTACGTGTGTAGATGCCACAAAATATGAGTTATGGGAGCaggagtgtaaagggttaagaGAAATCAGCAACACAGCCGTGCACAGATCACAGTAGTGATGAAAGGGAGAACAAGCACACAAATACAAGTACCATAGAAATGACATCCCCAATAAAATGtcctacttttaaatgtatctacatTACATGCTGCATGCAATTCAAGTACAGTTAAAGTCTGTAATAACTTACTGTAAAGCTCCCATTCCTTTCAACCACTCCTGCAGAGTGAAGTATCCCATGTTCTGTGCATCCAGCTTCCATGCCAGGACCAGCATCACAATTTTCAGGTTCGACTCCAATATCTTCACAAAATTTTTCCATGCCCTCAGGACCCACAACATCATCATTACCTGCAAAACAattactgcattaaaacattGATGCAGGCCTGAACCAAGTGTAATGCTACTGCAAACAAACAGACCAGTGAATAATGccttccataaaaaaaaaaaaaaaaaaatacaaccaagAACATGTGTATATTGGCTAATGTGTTGAGTGAAAACAATTTTGTGATTATAGagaaaaagcaaataaagtaattttaaaagattaaatcaatcCTGATGCATTTTCCCAAACTAGGGTAGAGTTTTATCCTATTCACTATTCAATAGTCTGTGGGACCATTAAGCACACTGGTATGTGCACGAAAGTGAATTGCTCCACAGTTCACAGCTTTCCAAATACAGTTAGTTTCTGTAGACCTGCAAACACCCTGTTTAGATGTGGAAATAACCTCAAAAATATGCCACAAAAGCATGCCAATTATGACCTCGTATCTAAACTGCTTTTTctatatgtataaaacaaaaaaggatgaACAGGAAATTGATTATTAAAGTTACTAATGAAAGGTTAAAGCCACATATCCACTGCCATAATTCCCATATGGATCTAACCAGCCCAGCAAACAGATCACCCTCACCAGCTACCTCTCCACAACACCCTGCATTAATCAATAGCAAACAGAGCATCTTGAAAAGACTGAACACTGTTAAATCACACAACCCAGTTTTCACTTAACATAGTTCAACTATCCAAGCAGGGTTCATACAGGATATGGTAAATACAATTCAAGGACTTTTGAGGACTTTTCCAATGACcaaaatgtagttttctattaccttcatataaataacaatgcatTTCCACATACAGAAAACATGCCATTAGTGCACTACAGTTAGTAGTGTGCAATTTGTAATAGTTGTAACTATTATTTTTGGTATCATGTATTGTAAAGACTGTGGTATGtcttaaagttaaaataaaaagttaccTTAAAACATAGTAGAGAAATTTTGGGCCATGTGTGTTGCTGGAAGTcatctgtgctgcatttgaagTTGTTGGAAAATAATCTTAGTGAAGTTTTTCCACTTTTCATCAAAGCTTCGTGTTTTGCAGACTTCATGTGGCTCTGGAGAGCAGCTTCTCCCATATTACTGATGTCGAAgtctttaacacattttttgcaGTGTAATAGATACTATTGGTGTCTGGTACTAGGCAACTGGCATACAAATCCATCTCCTGCCATGCaggattttatttcaattttgctttttaatttctttttttttttccagtatcaTCTCAGTAGTGCAACAACAGAGTTCATGGAGACCCAAGCAAGTCATTCCCAGACTAGGCTACgtgttattgtaatgtaatgtttttcattgtaaatattttattgcatgtgAATATCCTATGGATATTGggtacatttcagattttttaatgatttcaaaGTGAGTATGCAATAATGTGAATAGGACAATTTCCAAGGAGAATTTAGATATAAGCTCATGTTTATAATCCACATGATTTATTAGGACAGTAGTCTGTTATAGTATTATTAGGAACCACCTTTTTTAAGGGCTTTTCATGACCTTTCCCAGAAACCTATCGATTTTCCAGGTATTCCAGTACTTAAATTTCGTCATGTGAAATTCAAGCATTTCTCAGGACTTTAAGGACCTGTACATCCCCTATCCAagagtcttaaaataaaacaaggtatGTTCAAATTGCAACTGCAcatatttaaacttaaaaatatctCTTCCATTGTGTTGTGCACagagaaatgtaatgaatgaaattcatgaaaatacagattttttttatcgAGTAGAGAGGTGCTGGGGAAGTGCCACACACTTGTGAGGGAATGTATTCATTAGTACAAGTTCACGGAGTACTGAAACATGTCTGAAAGCCACATCTTCCAGCTTTGTATGATGCATGTGGCGGCCTGATGGCACATTTTAACAAAGCACAGATTAGCGCGGGACACTCAACATTATCATTGTAATGGGggaaagattatttaaaaaagttatccATCATATGCAATTACTCCTATAGTTATTGTTCTAATGTAAGCACTACTATGCATGTACAATAACAAGGGCATTGTTCTACAGGTATTAAAAAGTCTATATAGCTAGGTATACGagaatataagaaataaaactgttaatggccacaaaaaaaaaaagtttatacaACTGTGTACTTACTgtcttttataatatatatccCACAGAGAAATACAACTTCAAAGGCTATGGCAAGctaaaaatctataaaaacagaaaacacaaacaagctgCACTCTCACTATCTCACCTGCATACTCATAAAACCACTCCAAGCATCTCTTACTGGAGAAGATTTCTTCACTCTTGATCCTAGAGGCTTCGTGCTTTCTGTACACACTAGAATATGAAGACAGACACAACTGTgttttaagcaggtgtgaaaaaatgctgtaaagtagaatgctttcaaaaatagacatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113695 lncRNA upstream 35624 8783867 ~ 8784089 (+) True G91128
TU113664 lncRNA upstream 87081 8732368 ~ 8732632 (+) True G91104
TU113524 lncRNA upstream 532985 8286292 ~ 8286728 (+) True G91004
TU113511 lncRNA upstream 590137 8229315 ~ 8229576 (+) True G90991
TU113438 lncRNA upstream 829753 7989696 ~ 7989960 (+) True G90924
TU113726 lncRNA downstream 13810 8838647 ~ 8841038 (+) True G91151
TU113913 lncRNA downstream 1341693 10166530 ~ 10166747 (+) True G91307
TU113916 lncRNA downstream 1472565 10297402 ~ 10297808 (+) True G91310
TU113936 lncRNA downstream 1743341 10568178 ~ 10568428 (+) True G91329
TU113942 lncRNA downstream 1915266 10740103 ~ 10764336 (+) False G91334
AMCG00017534 mRNA upstream 10719 8807015 ~ 8808994 (+) True AMCG00017534
AMCG00017533 mRNA upstream 13245 8799335 ~ 8806468 (+) True AMCG00017533
AMCG00017527 mRNA upstream 54810 8752365 ~ 8764903 (+) True AMCG00017527
AMCG00017526 mRNA upstream 118959 8688089 ~ 8700754 (+) True AMCG00017526
AMCG00017523 mRNA upstream 165371 8647446 ~ 8654342 (+) True AMCG00017523
AMCG00017538 mRNA downstream 44277 8869114 ~ 8969478 (+) True AMCG00017538
AMCG00017543 mRNA downstream 193042 9017879 ~ 9021042 (+) True AMCG00017543
AMCG00017544 mRNA downstream 261740 9086577 ~ 9103203 (+) True AMCG00017544
AMCG00017545 mRNA downstream 302926 9127763 ~ 9147339 (+) True AMCG00017545
AMCG00017551 mRNA downstream 432369 9257206 ~ 9372195 (+) True AMCG00017551
TU113671 other upstream 65932 8751713 ~ 8753781 (+) False AMCG00017527
TU113646 other upstream 130307 8687697 ~ 8689406 (+) False AMCG00017526
TU113473 other upstream 686859 8132368 ~ 8132854 (+) True G90955
TU113388 other upstream 1126366 7692585 ~ 7693347 (+) True G90881
TU113384 other upstream 1147863 7668183 ~ 7671850 (+) True G90877
TU113887 other downstream 694936 9519773 ~ 9583280 (+) True G91281
TU114078 other downstream 3054777 11879614 ~ 11880499 (+) True G91452
TU114568 other downstream 5212039 14036876 ~ 14039063 (+) False AMCG00017620
TU114814 other downstream 6252488 15077325 ~ 15084278 (+) True G92046
TU114828 other downstream 6287773 15112610 ~ 15116031 (+) False AMCG00017650

Expression Profile