RNA id: TU113900


Basic Information

Item Value
RNA id TU113900
length 233
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G91294
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9594930 ~ 9595162 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAAACTGAGCTGTCAATGCTTTAActtttgaaaaagcaaacactGTACCATAGATATCAAACACATacctgtttatttttacatagtCTCACTTTGGTCCCGgccacagacacaaacactttCCCTTTGTAGCCCCGTAGATCCAGGTAACCACACTTGTCTGAGGAATGTGTGGAAAACTTCTGCGAGATCCAATATTGAGTGTTCATAGCAAGATGAAGTGTATTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113678 lncRNA downstream 859698 8732760 ~ 8735232 (-) False AMCG00017531
TU113611 lncRNA downstream 989304 8603621 ~ 8605626 (-) True G91064
TU113539 lncRNA downstream 1213260 8289765 ~ 8381670 (-) True G91016
TU113525 lncRNA downstream 1307813 8286889 ~ 8287117 (-) True G91005
TU113512 lncRNA downstream 1365369 8229315 ~ 8229561 (-) True G90992
TU113903 lncRNA upstream 37483 9632645 ~ 9632859 (-) True G91297
TU113904 lncRNA upstream 67402 9662564 ~ 9662788 (-) True G91298
TU113906 lncRNA upstream 80384 9675546 ~ 9675779 (-) True G91300
TU113907 lncRNA upstream 82309 9677471 ~ 9680221 (-) True G91301
TU113917 lncRNA upstream 702243 10297405 ~ 10297808 (-) True G91311
AMCG00017554 mRNA downstream 47616 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017550 mRNA downstream 222851 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017548 mRNA downstream 309427 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017549 mRNA downstream 363177 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017547 mRNA downstream 410184 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017556 mRNA upstream 766809 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017555 mRNA upstream 892135 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017559 mRNA upstream 1352584 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017558 mRNA upstream 1352948 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017557 mRNA upstream 1698446 11293608 ~ 11315800 (-) True AMCG00017557
TU113686 other downstream 839023 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 1079975 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 1598335 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 1762338 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 2481749 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 766138 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 4837996 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 6271785 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 6435240 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 6435294 16030456 ~ 16030905 (-) False G92129

Expression Profile