RNA id: TU113907


Basic Information

Item Value
RNA id TU113907
length 2751
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G91301
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 9677471 ~ 9680221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGTATTGACCTTATTATGTTTGTATAAAAGATAATCCACCCCTCAAAAAATGTACATCTAAAtgttatatgtttgtatttataagtTTGAAACCCCAAACTAGGAAAAGTCATATAATTATaggtaattaaaaaagaaagcagcCATTTAGGTTACATCATAggggttacatttatgattagaaaaaagttgcatcttactaaaaatgcagctgcacctgagtacagttctgtagttttctattagctgCACACATTGGCCTGGATGTAatcaaatgttatatataaacaccaacagaaaactaaaaaagccGATActtgaaaatgaatttattttcgGGTAAAGGGCAGAATCATCAAGTGATTTACAATATGCACACTGGTTGAGATTGTCATAGGGTTTGTAtgcacaaaacaacatttgCACACCAGTTAGAATTGAATAATGATGATGTTCATAGAAAAGTATcttattaaaatactaaatgaaaCATCTATGCATatggaatatatattattgcattatCTGCTAAAAAGATAATCATATCATGATTATATGATTATCTTTTTTGTTGATTCTATCCTCTCCAGtttctttacaaatacatattaatgactattctatatttacaaatatataggTTATGTTTTTGAAGATTGGTTCACAGGTGATGGATTGCATTGGGACTGCATGGCTTTTGAGTTCATTGGGTGGTTAATAACTGCATTTGACTATTTAAAAAACTGACAGAATGAGGTTTTTCAAGTAATAATACAACATATGCATACCAATATTATATGAATTTCATAACAAgcacatataaaacatttacaacataaaacacatgCAAGATGTTACCTTaccaaaaaataacattgataGAAATGGATACATTGTTACTTATTCataaaattgttaaaacaatGAATACGTTTTAAACCTTTGTACACTGTGAGGATGCTATATGGTACATATaagtattttgtatattgttaaGAGTGTGGATTTTAATGGCAGTATCATAACATTCTGGTAGTTATGTTATCGATTAATGCTAAGTGCTAAACAATGCTAAGTGTAAATGACATAGTGATTCATAGAAAGACcatgggcaggattaaatcaaaaatatttgcAAGGTGCAAACGCGAAAAGTTGCGGAAATcagaactttgacccacccgctaataggaaactacaaacctgtacatcacagtGGTTACATTCATGactagaagaaagtggcatcttactaaaaatgaagccgcaactgagtacagttctgtagttttctattagcgggtgggtcaaaattttgatttaatccagcccttaatACCACGATAATTTAGCAGCGtgatttccattcgcagacatgccgctaatgcttctgtgagcGACTTGCAAGCacgaacattttttatttaatcctgccccatgTCTCCTATCTGTTTgtgactgtgtttttttaacttgagCATTATACTGGAAATAAtccaaattaaaccaaaacatcCATTCCTTTACTAACCTGCAGTAACAGATTGGATTTGATttcagtaaaaaacaacaaaaaaaaaaacatagttctTTCTTTAATACTTTtagatatattaaattaaataagcttaAAATAGAAAAGTAGAGCGACTTATAATTGTtccaatatatcacattattttaacatacaattacccatttacacagctgggtttttactgcaGCAACAGgtaaagtgccttgctcaagggtacagcagcactGTCCGCCCACgtgggattgaacccacgactCCCACTCCAGAGTGCAGAGCCCTAAACGCTCCTCCCATCcatcattatcattatgttaatacaaattcaatacTGGAGATTCCCATACACGtatcttcagccttgagaacCAGACTGTGTATCAAAGTAATGGgttgtttctcttttcctctGGAAATATTGCTAGCTATTGTTTATAAAGCACCTGTCCTTCCATATAAGAGTTATACAATGTAATGTTCtgctaaaaataatgtaaattgaGAATATTCTTAAAGAGAGAATAAATGGATAATGGCAGTGTcctcaaacaacacaaaagcacatGACCATGCTTATGAAGATAACAAACCTAAACAATGTCTCAGATAGTGTAAATGCTAATGTTGTCCTATTGCATTTAACCTACAATTGTATAAAAGTTTTATTTGTTCACTATATCTCAGTAATCTTGATAATACAGTGGAAGCGAATGATAAACTGAGTTTAACAACCTCCATTATGATTCCTTTCCAGAAGATAACATTGATTGTAAGAAAAACGGAATACTGCTTGCATGTgtccacacatacatacacacacgtgtgcgtgtgtttgtgtgtgtgattaaaaaaatattcctttttCAGATCTATGCCTCTTTTAAGGTTCTGTTGCTTTTACTCAGCACCGCATTAAGTTCTTGTAAAAGATTTGGAGGCATCTGTGCTTCACATCCAAACATGGCTTTTCTTGGTAAAGCCTTGGGGTGTCTTTTATCACTTGATTGGCTGTGCTTGGAATCACAATGGGAAGGATCAGAATGCGCTTGGTATGCTGTTCCCCTTTTCTGTTTCACATTGAAAATAgatgcttctttgtgttttaaGCAGTCAGCCaccaaagcttttttttgttgtactcTGCTATTAgcatttctttcacatttcTTCACTTCAGTGGGAGCATTTAAGTCATTTGATTTCCTGTCAATCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113906 lncRNA downstream 1692 9675546 ~ 9675779 (-) True G91300
TU113904 lncRNA downstream 14683 9662564 ~ 9662788 (-) True G91298
TU113903 lncRNA downstream 44612 9632645 ~ 9632859 (-) True G91297
TU113900 lncRNA downstream 82309 9594930 ~ 9595162 (-) True G91294
TU113678 lncRNA downstream 942239 8732760 ~ 8735232 (-) False AMCG00017531
TU113917 lncRNA upstream 617184 10297405 ~ 10297808 (-) True G91311
TU113927 lncRNA upstream 677179 10357400 ~ 10361148 (-) True G91321
TU113962 lncRNA upstream 1387492 11067713 ~ 11068015 (-) True G91354
TU113963 lncRNA upstream 1471157 11151378 ~ 11151698 (-) True G91355
TU113967 lncRNA upstream 1587885 11268106 ~ 11268595 (-) True G91359
AMCG00017554 mRNA downstream 130157 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017550 mRNA downstream 305392 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017548 mRNA downstream 391968 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017549 mRNA downstream 445718 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017547 mRNA downstream 492725 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017556 mRNA upstream 681750 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017555 mRNA upstream 807076 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017559 mRNA upstream 1267525 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017558 mRNA upstream 1267889 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017557 mRNA upstream 1613387 11293608 ~ 11315800 (-) True AMCG00017557
TU113686 other downstream 921564 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 1162516 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 1680876 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 1844879 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 2564290 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 681079 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 4752937 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 6186726 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 6350181 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 6350235 16030456 ~ 16030905 (-) False G92129

Expression Profile