RNA id: TCONS_00010938


Basic Information

Item Value
RNA id TCONS_00010938
length 1646
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id XLOC_004733
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25312018 ~ 25430371 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGAAGCCCCGCCTTTCCCGTCACGTGGTGTCCGTCAGATCGTCACTGCCCCTTCCAGACTTGAAGAGCTCTAGTGCGCACTCGCTGCCTGCGTGCTTCAAGGAAATCAACAGTGCATAAATTAAACTCAGGTGCTTGAAACCGGATTCTCCTTCAGCAGGATTCCTTTTTAAGGCCGAATTTTAAATAGTATCTCCATCTAAGAAACCACTCATCCATTACTCTGACTCCGGTTCTGGCTGAGCTGTTCGGATCATTGCAAAACATTACATCATCACAGAGAGGGAACATCGCTACTACGGCCAAAGCGGCTGCCAAGGCGTCTGCAAAGGACTGTACACTGCCTCCTTTGTGATGTCCACAATGCGGATCCATGGTGACCACTAGGTAGAGAGGACGTCCAATAAGGGAACCAACGCTTCGTGTCTTCCACCACAGCATGTGattacattttgggAGTCTCTTCTAGACTGTTCCTCCCTCCTGGTCATCCTGCCACAGAGCTGGTATTCTGGGCTCTAGTGTGCCCTCCTGGCCTCGCCACAGCAGGCAGCCTTTCATTACAGCTGCCGGAGGAGGTGCCCTGGAGATCCCCATCGAAGACACCATCACCACACCCCAAACACCAGTGCCTCTCGCTGCTCTGAACACCAACAACAGCAAAACACATGCATCATCACTCAAGGGTGTTTTCCTGAGATGAGCTCCGGCATCCCTGTGACAGGAGCAAGGGGTTTGGGAACAGGACGGATGGATGTCATGTGTAGAaacacagcgccccctgctgaacACATAAAAAGCTGTGACTGTCCAAAAGCTGGAAAAAGCTGCCTTCAAAGGATACATTTCAAGatCCCTACAGAACTCAAACCCCGTCATtatggtcaactctgctctgtgtCTCAAATCCTTCGACGTATgcagcgagccactggacaaactggtaacagcggaaaagccatctaCACAGAGCATGACGTGGAGAGTTCAACTGGTGGATCAGTAAGAAGAACTGACGCACAACACTTTTAGAAAAGCTGAAAAAAGAGGACCAGACCTGAAGTTCTGGAGAAAGATCAAAAGAAAATCACATACTGTATTTGGTTATAGCTTGGACTCGTAACTCTTTAAGGACTGACATCAGTCTGACACTTTCATCATATGACATTCATCATGCTCAAAAGCTGTTCTAATTGGTCATAAATGCATTTTACTTAGTTGGATAAAGAATAAAGCCTCTTTGATGCCCAGAATTCACATAAAATTGAATTAAGATCTTTTCGAATAAATTTACAGtctttttttaggtgaacttaGGTGAAAAGTTGAGTTCATAAAAAATATGGCAgtgtgcactacctgacaaatgtcctatcacctatccaagttttaggaataataacttcagaagtggcttatttttaccaaaataaaatatgaacatgccttgattttaaattatatagttagaacagtaaggcctgactttgcttagaaaaaagtcctgtcatttaacaaaaataatgtacagtagaatataaagtcatggttctGTGGAAAAatgattaatattgtgtatgactcctttaagcttggaggactgcaacCATGcatcttattaataaagtcatctggaatggcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009371 lncRNA upstream 165362 25201543 ~ 25214727 (+) False XLOC_004731
TCONS_00010936 lncRNA upstream 165362 25205531 ~ 25214727 (+) False XLOC_004731
TCONS_00010937 lncRNA upstream 165362 25210011 ~ 25214727 (+) True XLOC_004731
TCONS_00009368 lncRNA upstream 304969 25073305 ~ 25075120 (+) False XLOC_004728
TCONS_00009377 lncRNA downstream 2255 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010742 lncRNA downstream 72035 25502406 ~ 25504380 (+) True XLOC_004735
TCONS_00010940 lncRNA downstream 1058982 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010942 lncRNA downstream 1159273 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA downstream 1159273 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00009375 mRNA upstream 95579 25223873 ~ 25284510 (+) True XLOC_004732
TCONS_00009374 mRNA upstream 112958 25223873 ~ 25267131 (+) False XLOC_004732
TCONS_00009373 mRNA upstream 112960 25223843 ~ 25267129 (+) False XLOC_004732
TCONS_00009370 mRNA upstream 269115 25097754 ~ 25110974 (+) True XLOC_004730
TCONS_00009369 mRNA upstream 287519 25085751 ~ 25092570 (+) True XLOC_004729
TCONS_00009378 mRNA downstream 2256 25432627 ~ 25485309 (+) False XLOC_004734
TCONS_00009379 mRNA downstream 37189 25467560 ~ 25487244 (+) False XLOC_004734
TCONS_00009381 mRNA downstream 170314 25600685 ~ 25603341 (+) True XLOC_004736
TCONS_00009382 mRNA downstream 210109 25640480 ~ 25770232 (+) True XLOC_004737
TCONS_00009384 mRNA downstream 345363 25775734 ~ 25830268 (+) False XLOC_004739
TCONS_00009372 other upstream 128302 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 814497 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 961749 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009355 other upstream 1034596 24342331 ~ 24345493 (+) False XLOC_004722
TCONS_00009353 other upstream 1165572 24214401 ~ 24214517 (+) True XLOC_004721
TCONS_00009380 other downstream 37941 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009383 other downstream 217756 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009419 other downstream 1704498 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 1726572 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 1788622 27218993 ~ 27220589 (+) True XLOC_004765

Expression Profile

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