RNA id: TU113917


Basic Information

Item Value
RNA id TU113917
length 404
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G91311
representative True

Chromosome Information

Item Value
chromosome id CM030131.1
NCBI id CM030131.1
chromosome length 33043351
location 10297405 ~ 10297808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctctctctctcacctgaaccagaaactcgctgccacagctcaacctgtagctctgttgccagaactggaaccagaaaccaaccaagtctttgtcggcaacagaagagttaaactggaagaaggagattgagccgtacaaagaattcttttaaaggactttattaaataaagaactttacagactgcgctgcccgcctgtgcccacctgatcagtggagttttacagctggacaattgactaagtcgactgaatacgaaagtgtcagtcatttaaatagctatctgagtcttaagaaactcgacccttggaaccaaacagggccctgctttcctcaaagactttgtcttcaaataaGTATGGTGAGAGACCCTGCTTGcccagaagattttgtgcacaaccttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113907 lncRNA downstream 617184 9677471 ~ 9680221 (-) True G91301
TU113906 lncRNA downstream 621626 9675546 ~ 9675779 (-) True G91300
TU113904 lncRNA downstream 634617 9662564 ~ 9662788 (-) True G91298
TU113903 lncRNA downstream 664546 9632645 ~ 9632859 (-) True G91297
TU113900 lncRNA downstream 702243 9594930 ~ 9595162 (-) True G91294
TU113927 lncRNA upstream 59592 10357400 ~ 10361148 (-) True G91321
TU113962 lncRNA upstream 769905 11067713 ~ 11068015 (-) True G91354
TU113963 lncRNA upstream 853570 11151378 ~ 11151698 (-) True G91355
TU113967 lncRNA upstream 970298 11268106 ~ 11268595 (-) True G91359
TU113970 lncRNA upstream 990047 11287855 ~ 11288163 (-) True G91362
AMCG00017554 mRNA downstream 750091 9495728 ~ 9547314 (-) True AMCG00017554
AMCG00017550 mRNA downstream 925326 9342114 ~ 9372079 (-) True AMCG00017550
AMCG00017548 mRNA downstream 1011902 9245216 ~ 9285503 (-) True AMCG00017548
AMCG00017549 mRNA downstream 1065652 9229000 ~ 9231753 (-) True AMCG00017549
AMCG00017547 mRNA downstream 1112659 9164861 ~ 9184746 (-) True AMCG00017547
AMCG00017556 mRNA upstream 64163 10361971 ~ 10362267 (-) False AMCG00017556
AMCG00017555 mRNA upstream 189489 10487297 ~ 10496150 (-) True AMCG00017555
AMCG00017559 mRNA upstream 649938 10947746 ~ 10948005 (-) True AMCG00017559
AMCG00017558 mRNA upstream 650302 10948110 ~ 10949709 (-) True AMCG00017558
AMCG00017557 mRNA upstream 995800 11293608 ~ 11315800 (-) True AMCG00017557
TU113686 other downstream 1541498 8755288 ~ 8755907 (-) True G91119
TU113572 other downstream 1782450 8496495 ~ 8514955 (-) True AMCG00017520
TU113456 other downstream 2300810 7992137 ~ 7996595 (-) True G90939
TU113453 other downstream 2464813 7830885 ~ 7832592 (-) True G90937
TU113233 other downstream 3184224 7112436 ~ 7113181 (-) True G90749
TU113928 other upstream 63492 10361300 ~ 10497104 (-) True AMCG00017556
TU114641 other upstream 4135350 14433158 ~ 14479787 (-) True AMCG00017631
TU114907 other upstream 5569139 15866947 ~ 15867647 (-) True G92124
TU114913 other upstream 5732594 16030402 ~ 16030905 (-) True G92129
TU114912 other upstream 5732648 16030456 ~ 16030905 (-) False G92129

Expression Profile